PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PH01000069G0560 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
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Family | ERF | ||||||||
Protein Properties | Length: 103aa MW: 11145.9 Da PI: 9.7899 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 45.8 | 1.5e-14 | 18 | 59 | 2 | 47 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaai 47 +y+GVr ++ +gr++AeIrdp k++ ++lg+f++ae Aa+a++ PH01000069G0560 18 RYRGVRKRP-SGRYAAEIRDPA---KKTPIWLGTFDSAEAAARACE 59 59*******.7*********83...36**********888888876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 7.2E-9 | 18 | 59 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.6E-16 | 18 | 76 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 2.96E-18 | 18 | 57 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 7.5E-20 | 18 | 64 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 16.028 | 18 | 75 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 8.5E-14 | 18 | 62 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 3.5E-8 | 19 | 30 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.5E-8 | 41 | 57 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 103 aa Download sequence Send to blast |
MRKAKPPQPQ PSPSPEIRYR GVRKRPSGRY AAEIRDPAKK TPIWLGTFDS AEAAARACEQ 60 ENLSFSLSFS GISNDVAAVV SLIGKCLFFQ AADAICFFAL LI* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PH01000069G0560 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT069519 | 4e-61 | BT069519.1 Zea mays full-length cDNA clone ZM_BFb0155J08 mRNA, complete cds. | |||
GenBank | KJ727549 | 4e-61 | KJ727549.1 Zea mays clone pUT5409 AP2-EREBP transcription factor (EREB19) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015641022.1 | 1e-25 | ethylene-responsive transcription factor 3 | ||||
TrEMBL | A0A1E5W6B3 | 1e-31 | A0A1E5W6B3_9POAL; Uncharacterized protein | ||||
STRING | ORUFI06G27450.1 | 2e-25 | (Oryza rufipogon) | ||||
STRING | OBART06G25530.1 | 4e-25 | (Oryza barthii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6102 | 23 | 47 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G15210.1 | 2e-20 | ethylene responsive element binding factor 4 |