PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PH01000068G1560 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
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Family | bHLH | ||||||||
Protein Properties | Length: 157aa MW: 17330.6 Da PI: 10.2411 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 16 | 2.2e-05 | 80 | 118 | 16 | 54 |
HHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 16 iNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 i + ++L+++lP++ + ++ + s a L++++ YI+sL PH01000068G1560 80 IAELVSRLQSVLPESRRRNASRASAAKLLKETCSYIRSL 118 5667789*******77999999***************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 8.765 | 64 | 118 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 3.93E-7 | 78 | 137 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 3.5E-7 | 79 | 134 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009416 | Biological Process | response to light stimulus | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 157 aa Download sequence Send to blast |
MDYPFATVTT YNSQLQSYTG SKSRRVGVGE RMIHTYIASP GRNRKKQSRR GAVLITEESC 60 SACACVRMSR RRGQISDEEI AELVSRLQSV LPESRRRNAS RASAAKLLKE TCSYIRSLHR 120 EVHDLSDRLA QLMASVDGDS PQADIIRSLL SSGPPS* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PH01000068G1560 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FP096637 | 0.0 | FP096637.1 Phyllostachys edulis cDNA clone: bphyst005l01, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010917019.1 | 3e-37 | transcription factor ILI5 | ||||
TrEMBL | A0A2I0VAG7 | 9e-35 | A0A2I0VAG7_9ASPA; Transcription factor bHLH135 | ||||
STRING | GSMUA_Achr5P17560_001 | 3e-35 | (Musa acuminata) | ||||
STRING | GSMUA_Achr9P09010_001 | 2e-35 | (Musa acuminata) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G26945.1 | 1e-22 | bHLH family protein |