PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000064G0630
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family CAMTA
Protein Properties Length: 707aa    MW: 78284.7 Da    PI: 6.1926
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000064G0630genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1136.49.5e-4399136118
             CG-1  36 sgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfqrrcywlLeeelekivlvhylevk 118
                       gsl+L++rk++ryfrkDG++w kkkdgktv+E+hekLKvg+v+vl+cyYah+ee ++fqrr+ywlLee + +ivlvhylevk
  PH01000064G0630   9 GGSLFLFDRKILRYFRKDGHNWTKKKDGKTVKEAHEKLKVGSVDVLHCYYAHGEELENFQRRTYWLLEEGFMNIVLVHYLEVK 91 
                      59******************************************************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM010762.2E-42191IPR005559CG-1 DNA-binding domain
PROSITE profilePS5143759.7196IPR005559CG-1 DNA-binding domain
PfamPF038594.1E-361090IPR005559CG-1 DNA-binding domain
SuperFamilySSF525401.62E-8535587IPR027417P-loop containing nucleoside triphosphate hydrolase
SMARTSM000150.094536558IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500968.828537566IPR000048IQ motif, EF-hand binding site
PfamPF006120.0036538557IPR000048IQ motif, EF-hand binding site
SMARTSM000150.0022559581IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500969.706560584IPR000048IQ motif, EF-hand binding site
PfamPF006125.5E-5562581IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 707 aa     Download sequence    Send to blast
MASAHLIGGG SLFLFDRKIL RYFRKDGHNW TKKKDGKTVK EAHEKLKVGS VDVLHCYYAH  60
GEELENFQRR TYWLLEEGFM NIVLVHYLEV KGGKQSFSRA KEAEEIARLS SADSPACSNS  120
FASQSQVASA SQTMDAESPI SGQISEYEDA ETVAGFHGEI QPTTANLNNH FVTHHDIASV  180
FNEAGAGLRG GSKTRLDSVQ FGEPFPEYPT GFIEPTLYSS VATMESNNLD DSSRLETFMS  240
EALYTNNLTQ KEADALSAAG MTSSQVQNDS YTDGIIRYPL LKQSSLDLFK IEPDGLKKFD  300
SFSRWMSNEL AEVVDLDIKS SSDAFWSSTE TVNVADGSSM PINEQLDAYV VSPSLSQDQL  360
FSIIDVSPSW ATGSKKTKVV IMGTFLANKD VENYPTHQFP SGRTPADLAS ENGHKGIAGF  420
LAESALTSHL SVLTLKESKG GNVEEICGLA AAEDFAESSS AQLPCQDSQA ESLKDSLSAV  480
RKSTQAAARI FQAFRVESFH RKKVVEYGDD DCGLSDERTL SLVSLRNAKP GQNDVPLHSA  540
AVRIQNKFRG WKGRKEFMII RQKIVKIQAH VRGHQVRKNY RKIVWSVGIV EKVILRWRRR  600
GRGLRGFQPD KQLAGPSQQE KDFLKDGRKQ AEGRLERALA RVKSMTQYPE AREQYRRLQT  660
CVTELQESKA IQDKMLSDAA GADGGDFMAE LEDLCGDEET AMSTFL*
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds calmodulin in a calcium-dependent manner in vitro (PubMed:11925432). Binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Involved in freezing tolerance (PubMed:19270186). Involved in freezing tolerance in association with CAMTA2 and CAMTA3. Contributes together with CAMTA2 and CAMTA3 to the positive regulation of the cold-induced expression of DREB1A/CBF3, DREB1B/CBF1 and DREB1C/CBF2 (PubMed:23581962). Involved in drought stress responses by regulating several drought-responsive genes (PubMed:23547968). Involved in auxin signaling and responses to abiotic stresses (PubMed:20383645). Activates the expression of the V-PPase proton pump AVP1 in pollen (PubMed:14581622). {ECO:0000250|UniProtKB:Q8GSA7, ECO:0000269|PubMed:11925432, ECO:0000269|PubMed:14581622, ECO:0000269|PubMed:19270186, ECO:0000269|PubMed:20383645, ECO:0000269|PubMed:23547968, ECO:0000269|PubMed:23581962, ECO:0000305|PubMed:11925432}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000064G0630
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by UVB, wounding, ethylene and methyl jasmonate (PubMed:12218065). Induced by salt stress and heat shock (PubMed:12218065, PubMed:20383645). Induced by aluminum (PubMed:25627216). {ECO:0000269|PubMed:12218065, ECO:0000269|PubMed:20383645, ECO:0000269|PubMed:25627216}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015647012.10.0calmodulin-binding transcription activator 1 isoform X1
SwissprotQ9FY746e-90CMTA1_ARATH; Calmodulin-binding transcription activator 1
TrEMBLB9FUA80.0B9FUA8_ORYSJ; Uncharacterized protein
STRINGBRADI1G21372.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP60838140
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G09410.17e-77ethylene induced calmodulin binding protein