PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000059G2190
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family bHLH
Protein Properties Length: 342aa    MW: 36678.8 Da    PI: 4.6077
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000059G2190genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH25.23.1e-081682051254
                      HHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
              HLH  12 RRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                      RR+r+N++++ Lr+++Pk +      K++  +iL  +++Y+k+L
  PH01000059G2190 168 RRRRLNDRLSMLRSIVPKiS------KMDRTSILGDTINYVKEL 205
                      9999**************66......****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000836.34E-9152205No hitNo description
PROSITE profilePS5088812.424156205IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.1E-9164211IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.96E-11164218IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.1E-11166216IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.9E-6168205IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 342 aa     Download sequence    Send to blast
MELMDEEPFL EELMALQRET PADLWHAYPS GGLMIGDLLL GGDARSMQVS PLQALPVPLP  60
PPPPLHEEIS FDCLSEVCIP YKNGAVLTDA RQMAIYHPVH ETAVAVVEER CEVRHGGGGA  120
GDGSPMFVFG VGGVGAAGSE NAMDGATASV HPKSRRPGAP SKNLMAERRR RLNDRLSMLR  180
SIVPKISKMD RTSILGDTIN YVKELMDRIK TIQDEAGASS PEDLNTLSTL TVTAASSSAE  240
GNETMLTMNS PRFDVERREN GSTRVEIACA ANPGLLPSTL SVLEVLGMEI EQCVVSCFGD  300
FAMKASCLQD DEKMKMISSE EIKRSLFKSA GYGGSDGGVY I*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1168175RRRLNDRL
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. May be involved in the differentiation of stomatal guard cells. {ECO:0000269|PubMed:17088607}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000059G2190
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0998892e-32FP099889.1 Phyllostachys edulis cDNA clone: bphyst008e05, full insert sequence.
GenBankFP1006432e-32FP100643.1 Phyllostachys edulis cDNA clone: bphyst017o19, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004985797.11e-105transcription factor bHLH61
SwissprotQ9LSL13e-55BH093_ARATH; Transcription factor bHLH93
TrEMBLK4AC631e-104K4AC63_SETIT; Uncharacterized protein
STRINGPavir.Ib00206.1.p1e-106(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP13023799
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65640.12e-56beta HLH protein 93
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Sharma N, et al.
    NO FLOWERING IN SHORT DAY (NFL) is a bHLH transcription factor that promotes flowering specifically under short-day conditions in Arabidopsis.
    Development, 2016. 143(4): p. 682-90
    [PMID:26758694]
  4. Chen YS, et al.
    Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis.
    Plant Mol. Biol., 2017. 93(3): p. 299-311
    [PMID:27866313]
  5. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]