PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000057G1290
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family WOX
Protein Properties Length: 427aa    MW: 45076.3 Da    PI: 8.5897
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000057G1290genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox56.64.4e-18159219357
                      --SS--HHHHHHHHHHHHH..SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
         Homeobox   3 kRttftkeqleeLeelFek..nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 
                      +R+t+t+eq+++L el+++   r p+ e+++++++ l    +++ ++V++WFqN++a+e++
  PH01000057G1290 159 TRWTPTSEQVRILRELYYNcgIRSPNSEQIQRITAMLrqygRIEGKNVFYWFQNHKARERQ 219
                      7*****************8678*************************************97 PP
2Wus_type_Homeobox112.81.8e-36158221365
  Wus_type_Homeobox   3 rtRWtPtpeQikiLeelyk.sGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 
                         tRWtPt+eQ++iL+ely+ +G+r+Pn+e+iqrita+L++yG+ie+kNVfyWFQN+kaRerqk+
    PH01000057G1290 158 GTRWTPTSEQVRILRELYYnCGIRSPNSEQIQRITAMLRQYGRIEGKNVFYWFQNHKARERQKK 221
                        69***************9769*****************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466894.71E-11153223IPR009057Homeodomain-like
PROSITE profilePS500719.977154220IPR001356Homeobox domain
SMARTSM003894.0E-5156224IPR001356Homeobox domain
CDDcd000863.57E-6159221No hitNo description
PfamPF000467.7E-16159219IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.608.1E-7160219IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010492Biological Processmaintenance of shoot apical meristem identity
GO:0080166Biological Processstomium development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 427 aa     Download sequence    Send to blast
MGFRVTDLRF VVEVCESSDA ERSTASCVTY VGVELRQRSV ARNGRVVAAS ARMRPAAAAV  60
ACARVDWRRC GDGAMPPWGR SSGCAAVVDP AQTQTLLRSC HCSYYLVLAM DHTNIRMQQQ  120
RQINGGEGAA ANVGGRSGGG GGGDGAGGGS VSVCRPSGTR WTPTSEQVRI LRELYYNCGI  180
RSPNSEQIQR ITAMLRQYGR IEGKNVFYWF QNHKARERQK KRLTTLDVNT SSVAAGAADV  240
NHLGVLSLSP SGAAAPSSPG LYSGNGASAV QQLEASTNCW DSSTAMATKR SFLQDYMGVS  300
SNGAAAAPTP WARFSSDQRA MATREPETLP LFPTAGSCPG EGVQESIVRG SYLPNFQCWG  360
AANAAAAAAT ATTITTQQHQ LLQLQEQHSF HSSNQLPSQD AVAAAAGTSL ELTLSSYCSP  420
YPAGSM*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1133141GGRSGGGGG
Functional Description ? help Back to Top
Source Description
UniProtTranscription repressor required for the formation and development of tiller buds and panicles (PubMed:25697101). Required for tiller formation and female sterility (PubMed:27194802). Required for the early developmental stages of axillary meristem formation (PubMed:25841039). Plays a role in maintaining the axillary premeristem zone and in promoting the formation of the axillary meristem by promoting OSH1 expression (PubMed:25841039). Does not seem to be involved in maintenance of the shoot apical meristem (SAM) (PubMed:25841039). {ECO:0000269|PubMed:25697101, ECO:0000269|PubMed:25841039, ECO:0000269|PubMed:27194802}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00265DAPTransfer from AT2G17950Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000057G1290
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by the cytokinin 6-benzylaminopurine. {ECO:0000269|PubMed:17351053}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB2188941e-103AB218894.1 Oryza sativa Japonica Group mRNA for OsWUS protein, complete cds.
GenBankAL6069991e-103AL606999.3 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0084K01, complete sequence.
GenBankAM2347461e-103AM234746.1 Oryza sativa mRNA for WUS protein.
GenBankAP0149601e-103AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence.
GenBankKC6111081e-103KC611108.1 Oryza nivara WUS (WUS) gene, partial cds.
GenBankKC6111101e-103KC611110.1 Oryza glumipatula WUS (WUS) gene, partial cds.
GenBankKC6111141e-103KC611114.1 Oryza glaberrima WUS (WUS) gene, partial cds.
GenBankKC6111151e-103KC611115.1 Oryza sativa Indica Group WUS (WUS) gene, partial cds.
GenBankKC6111161e-103KC611116.1 Oryza sativa Japonica Group WUS (WUS) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015635371.12e-98WUSCHEL-related homeobox 1B
SwissprotQ7XM132e-99WOX1_ORYSJ; WUSCHEL-related homeobox 1
TrEMBLJ3M2C91e-94J3M2C9_ORYBR; Uncharacterized protein
STRINGOS04T0663600-008e-98(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP124653136
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G17950.14e-35WOX family protein
Publications ? help Back to Top
  1. Lu Z, et al.
    MONOCULM 3, an ortholog of WUSCHEL in rice, is required for tiller bud formation.
    J Genet Genomics, 2015. 42(2): p. 71-8
    [PMID:25697101]
  2. Tanaka W, et al.
    Axillary Meristem Formation in Rice Requires the WUSCHEL Ortholog TILLERS ABSENT1.
    Plant Cell, 2015. 27(4): p. 1173-84
    [PMID:25841039]
  3. Mjomba FM, et al.
    Homeobox Is Pivotal for OsWUS Controlling Tiller Development and Female Fertility in Rice.
    G3 (Bethesda), 2016. 6(7): p. 2013-21
    [PMID:27194802]