PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000050G1350
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family WRKY
Protein Properties Length: 711aa    MW: 76317.8 Da    PI: 6.4358
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000050G1350genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY92.72.8e-29284340259
                      --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                      +Dgyn rKYGq +vk+se+prsYY+Ct+++C+vkk+vers+ d++++ei+Yeg+Hnh+
  PH01000050G1350 284 EDGYNCRKYGQAQVKNSEHPRSYYKCTHPKCSVKKNVERSQ-DGQITEIIYEGTHNHP 340
                      8****************************************.***************7 PP
2WRKY103.98.6e-33510568159
                      ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                      ldDgy+WrKYGqK+vkg+++prsYY+Ct++gC+v+k+ver+++d k v++tYeg+Hnhe
  PH01000050G1350 510 LDDGYRWRKYGQKVVKGNPNPRSYYKCTHQGCSVRKHVERASHDLKSVITTYEGKHNHE 568
                      59********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.809.3E-26280342IPR003657WRKY domain
SuperFamilySSF1182903.01E-22282342IPR003657WRKY domain
SMARTSM007741.2E-29283341IPR003657WRKY domain
PROSITE profilePS5081120.266284342IPR003657WRKY domain
PfamPF031061.3E-21284340IPR003657WRKY domain
Gene3DG3DSA:2.20.25.803.4E-37495570IPR003657WRKY domain
SuperFamilySSF1182906.8E-29502570IPR003657WRKY domain
PROSITE profilePS5081137.883505570IPR003657WRKY domain
SMARTSM007743.3E-38510569IPR003657WRKY domain
PfamPF031062.9E-25511568IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 711 aa     Download sequence    Send to blast
MAGTRDRGSL MEDWMHPTLS PRTLMSSFLN EEFGSGPFSS IFSEHDSNKP QDQSEKIRQL  60
VGLSEKVPAQ TVKNTLQMDI SLEPNLLNAN QKSNSHGGLA ERMVARAGFS VPKIDTSRVA  120
SSTVIRSPVA IPPGLSPTTL LESPVFLYNA MAQPSPTTGK LPFLMATNAK STIPPAAKMT  180
EDCAFGNDVF SFQPHLGSKA PSFSTVEKGY NACHQNQSLS IIHQQESSLQ SNFTAVKDTT  240
DETIVKPKIS DSIFGDNYSS ADEEDDETNQ NGEYSSAAIG SPAEDGYNCR KYGQAQVKNS  300
EHPRSYYKCT HPKCSVKKNV ERSQDGQITE IIYEGTHNHP LPPPNRQSGI PISHINDPQI  360
NVIDNPGSQA GLNSASLWGN AKNGCLQDVH SDGVEARPAA CLPVSAYGDT SIMESQDAVD  420
VSSTLSNEED ERATPGTISR PPHWSNPGGV SIDCDGDEDE TESKRRKLDA LATATITTAA  480
TSSIEMGAAA SRAVREPRVV VQTTSEVDIL DDGYRWRKYG QKVVKGNPNP RSYYKCTHQG  540
CSVRKHVERA SHDLKSVITT YEGKHNHEVP AARNSGHGSS GSGSAPPSAP YANSSQRRHD  600
PAQASFAQFG GTAPFGSFVL PPRAQLGPAG GNFRFGMVPP GLPIPMSALE PLAPTKMIGH  660
PSSVQGYPGL MMPEGELKAE PVPQSGFPAV NAASSAYQQM MNRPPFGHQM *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-35284571878Probable WRKY transcription factor 4
2lex_A1e-35284571878Probable WRKY transcription factor 4
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000050G1350
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010238285.10.0probable WRKY transcription factor 2
TrEMBLA0A0D9XEY20.0A0A0D9XEY2_9ORYZ; Uncharacterized protein
STRINGLPERR09G10410.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP207538100
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56270.11e-123WRKY DNA-binding protein 2