PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000050G0500
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family bHLH
Protein Properties Length: 370aa    MW: 39211.3 Da    PI: 9.693
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000050G0500genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.35.5e-13299344655
                      HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      +++Er RR ri +++ +L+el+P+      k  + a++L +Av+YIk+Lq
  PH01000050G0500 299 SIAERVRRTRISERIRKLQELVPNM----EKQTNTADMLDLAVDYIKDLQ 344
                      689*********************7....467*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.199293343IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474597.07E-16296353IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.20E-13297348No hitNo description
Gene3DG3DSA:4.10.280.105.3E-15298355IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.6E-10299344IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.3E-13299349IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 370 aa     Download sequence    Send to blast
MYGAPVSKDL NLPAQPQQPA AGVRTPPQMS SPGLLRYRSA PSTLLGEVCG DFLPAAGAGA  60
GHRPASPDHA ADTVLARFLA GHHPEVRDKP PRPALAAAHF PEDAASMASQ QQLMYQSQQQ  120
MAAMEGLYRT FSSAVGYGNM LRVGMGGGGG FRNGDARLKG QLSFSSRQGS VMSQISEMGS  180
EELGGSSPEA GSNGAAREPA ARGYSSIPGY PMGASSGWEE PSPSPSPSLL SDNLSGVKRP  240
RVDVPASDVP AAQLTHQFSL PSNSKSSPEM AAIEKFLQFQ DAVPCKIRAK RGCATHPRSI  300
AERVRRTRIS ERIRKLQELV PNMEKQTNTA DMLDLAVDYI KDLQKQVKVL NGSRAKCTCP  360
ASKQQQFAG*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000050G0500
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1209021e-121AK120902.1 Oryza sativa Japonica Group cDNA clone:J023030N23, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001151233.11e-139uncharacterized protein LOC100284866
TrEMBLA0A0A9VBR81e-161A0A0A9VBR8_ARUDO; Uncharacterized protein
STRINGPavir.J00377.1.p1e-139(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP188438103
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42280.19e-44bHLH family protein