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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PH01000050G0170 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
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Family | SBP | ||||||||
Protein Properties | Length: 360aa MW: 38146.4 Da PI: 8.8025 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 134.8 | 2.7e-42 | 47 | 122 | 1 | 76 |
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkk 76 +CqvegC +dls ak y+ rhkvC +hskap v+v+gleqrfCqqCsrfh+l efD++krsCrrrLa+hnerrrk+ PH01000050G0170 47 RCQVEGCGVDLSGAKAYYCRHKVCGMHSKAPRVVVAGLEQRFCQQCSRFHQLPEFDQGKRSCRRRLAGHNERRRKP 122 6*************************************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 5.3E-35 | 42 | 109 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 32.419 | 45 | 122 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 1.12E-40 | 46 | 126 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 3.5E-33 | 48 | 121 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010228 | Biological Process | vegetative to reproductive phase transition of meristem | ||||
GO:0048653 | Biological Process | anther development | ||||
GO:2000025 | Biological Process | regulation of leaf formation | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 360 aa Download sequence Send to blast |
MEAGGGGDDV HGLKFGKKIY FEQDAAGGSG SATAAAGGKK APAPPPRCQV EGCGVDLSGA 60 KAYYCRHKVC GMHSKAPRVV VAGLEQRFCQ QCSRFHQLPE FDQGKRSCRR RLAGHNERRR 120 KPPLGTLSSR YGRLAASFHE EPGRFRSFLL DFSYPRVPSS VRDPWSTIQS GDRMSGTIQR 180 QGSHELHPHR STVAGYGDHA YNGQGGSAAG APLLPAFELP AGGCLAGVAT DSSCALSLLS 240 TQPWDSTHSA SHNRSPAMST TSTFEGNPVV PSVMASNYMA ASSAWTSSRG HEGARNVPLH 300 HLPHEVALNE VHPGSVHHGH FSGELELALQ GSARPNPPQV EHGSGSAFSH SSNAMNWSL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 4e-30 | 48 | 121 | 11 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00307 | DAP | Transfer from AT2G42200 | Download |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PH01000050G0170 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Negatively regulated by microRNAs miR156b and miR156h. {ECO:0000305|PubMed:16861571}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FP095313 | 0.0 | FP095313.1 Phyllostachys edulis cDNA clone: bphylf047j05, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015610961.1 | 1e-176 | squamosa promoter-binding-like protein 17 isoform X1 | ||||
Swissprot | A3C057 | 1e-177 | SPL17_ORYSJ; Squamosa promoter-binding-like protein 17 | ||||
TrEMBL | A0A3S6H5L5 | 0.0 | A0A3S6H5L5_9POAL; Squamosa-promoter binding protein-like protein | ||||
STRING | OMERI09G11350.1 | 1e-179 | (Oryza meridionalis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2527 | 37 | 87 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G42200.1 | 8e-48 | squamosa promoter binding protein-like 9 |