PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PH01000049G0150

Organism

Phyllostachys heterocycla

Taxonomic ID

38705

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys

Family

bZIP

Protein Properties

Length: 326aa MW: 36459 Da PI: 8.9369

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PH01000049G0150	genome	ICBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	32.4	2.1e-10	44	86	3	45
XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaL 45 ++k rr+++NReAAr+sR+RKka++++Le+ +L++ ++L PH01000049G0150 44 DRKTMRRLAQNREAARKSRLRKKAYVQQLENSRIKLTQLEQEL 86 68999*************************9777777666555 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	4.3E-8	36	89	No hit	No description
SMART	SM00338	3.6E-8	41	105	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	2.3E-7	44	86	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	9.335	44	88	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	4.5E-7	46	89	No hit	No description
PROSITE pattern	PS00036	0	49	64	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	7.0E-33	128	201	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 326 aa Download sequence Send to blast
MADASPRTDT STDDSDENHR LEPGQGALVV ASDSSDRSKD KHEDRKTMRR LAQNREAARK 60 SRLRKKAYVQ QLENSRIKLT QLEQELQRAR QQGIFISSSV DQPHSMSGNG ALAFDMEYAR 120 WLEEHNKQIN ELRAAVSAHA SDNDLRSVVD KIMSHYEEIF KLKGNAAKTD VFHVLSGMWK 180 APAERCFLWL GGFRPSELLK LEPLTEQQLS GIYNLQQSSQ QAEDALSQGM EALQQSLAET 240 LAGSLGSSGS TGNVANYMGQ MAMAMGKLGT LENFLRQADN LRQQTLQQMQ RIMTTRQSAR 300 ALLVISDYSS RLRALSSLWL ARPKE*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. Binds to the hexamer motif 5'-ACGTCA-3' of histone gene promoters.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	PH01000049G0150

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB051296	0.0	AB051296.1 Oryza sativa OsNIF3 mRNA for bZIP transcription factor, complete cds.
GenBank	AK242743	0.0	AK242743.1 Oryza sativa Japonica Group cDNA, clone: J090049N20, full insert sequence.
GenBank	HM991168	0.0	HM991168.1 Oryza sativa Japonica Group cultivar Dongjin putative TGA2-like protein 3 mRNA, complete cds.
GenBank	KM096571	0.0	KM096571.1 Oryza sativa Indica Group histone-binding protein mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010230791.1	0.0	transcription factor HBP-1b(c38)
Swissprot	P23923	0.0	HBP1B_WHEAT; Transcription factor HBP-1b(c38)
TrEMBL	A0A0E0JH49	0.0	A0A0E0JH49_ORYPU; Uncharacterized protein
STRING	Pavir.Ea01074.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP486	38	185

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06950.4	1e-142	bZIP family protein

Publications ? help Back to Top
Tabata T,Nakayama T,Mikami K,Iwabuchi M HBP-1a and HBP-1b: leucine zipper-type transcription factors of wheat. EMBO J., 1991. 10(6): p. 1459-67 [PMID:2026143]