PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PH01000046G1730 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
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Family | ERF | ||||||||
Protein Properties | Length: 265aa MW: 28961.6 Da PI: 9.7592 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 61.6 | 1.7e-19 | 92 | 142 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 y+GVr++ +g+WvAeIr p + r r++lg++g++e Aa a+++a+ kl+ge PH01000046G1730 92 LYRGVRQRQ-WGKWVAEIRLPQN---RVRVWLGTYGSPETAAHAYDRAAYKLRGE 142 59****999.**********954...5**************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 1.00E-27 | 91 | 149 | No hit | No description |
SMART | SM00380 | 4.3E-31 | 92 | 155 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.5E-29 | 92 | 149 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 22.669 | 92 | 149 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.05E-21 | 92 | 149 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 1.2E-13 | 93 | 142 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.0E-12 | 93 | 104 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.0E-12 | 131 | 151 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 265 aa Download sequence Send to blast |
MDDSLRTLSP ASFPGEVRSA VSSLLLSPGA SALDTVFSHL PPPVTIPPLG SSVYYRQSEL 60 LRHFAASQAQ STASSSSAAS FPTADDGAPR KLYRGVRQRQ WGKWVAEIRL PQNRVRVWLG 120 TYGSPETAAH AYDRAAYKLR GEYARLNFPG VMDGRDCPEN LRQLRAAVDA KIQAIRVRLA 180 RKRKRARRQR EENKENACTE GAKAPTAARP VVSEGATSET TTTTSSYGSP DGVLSMSAAS 240 ADAECWLERM PSFDPELIWE MLNF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 2e-17 | 91 | 149 | 4 | 63 | ATERF1 |
3gcc_A | 2e-17 | 91 | 149 | 4 | 63 | ATERF1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 179 | 185 | ARKRKRA |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PH01000046G1730 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KT260119 | 0.0 | KT260119.1 Phyllostachys edulis DREB2A mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015638431.1 | 1e-128 | ethylene-responsive transcription factor ERF061 | ||||
TrEMBL | A0A0M4L961 | 0.0 | A0A0M4L961_9POAL; DREB2A | ||||
STRING | OPUNC05G24070.1 | 1e-133 | (Oryza punctata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP8828 | 28 | 42 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G22190.1 | 1e-32 | ERF family protein |
Publications ? help Back to Top | |||
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