PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys

Family

GRF

Protein Properties

Length: 336aa MW: 37271.8 Da PI: 9.0631

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PH01000045G1330	genome	ICBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	77.4	1.4e-24	88	132	1	45
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 d+ep+rCrRtDGKkWRCs+++ +++k+CErH+hrgr+rsrk++e+ PH01000045G1330 88 DPEPWRCRRTDGKKWRCSKEAHPDSKYCERHMHRGRNRSRKPVES 132 79****************************************986 PP
2	QLQ	62.7	1e-21	15	49	2	36
QLQ 2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiq 36 FTaaQ+++L++Q+l+yKyL+a++PvPp+Ll++i+ PH01000045G1330 15 VFTAAQWAELEQQALIYKYLMAGAPVPPDLLLPIR 49 5********************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00951	1.1E-11	14	50	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51666	23.433	15	50	IPR014978	Glutamine-Leucine-Glutamine, QLQ
Pfam	PF08880	3.2E-16	16	49	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51667	26.346	88	132	IPR014977	WRC domain
Pfam	PF08879	3.8E-21	89	131	IPR014977	WRC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0005524	Molecular Function	ATP binding

Sequence ? help Back to Top
Protein Sequence Length: 336 aa Download sequence Send to blast
MGMGGYHHQQ QRAAVFTAAQ WAELEQQALI YKYLMAGAPV PPDLLLPIRP HSAAAAATFS 60 FANPAASPFY HHHHPSLSYY AYYGKKLDPE PWRCRRTDGK KWRCSKEAHP DSKYCERHMH 120 RGRNRSRKPV ESKTATPAPA PQPQPQLSTV TTTTSGYSLG AKVDVGELSF FSGASGNTRG 180 FTIDSPTDSS WHSLPSSVPP YPLSKTRDSG LLPGAYSYSH LEPSQELGQV TIASLSQEQE 240 RHSFSGGTGG LLGNVKQENQ PLRPFFDEWP GTRDSWSEMD DERSNRTSFS TTQLSISIPM 300 PRCGSPIYLK RLRMYLFACP RHGMSHGDYS PHLLC*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that plays a regulatory role in gibberellin-induced stem elongation. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	PH01000045G1330

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK376404	1e-156	AK376404.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3122P12.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015641603.1	0.0	growth-regulating factor 5 isoform X2
Swissprot	Q6AWY4	0.0	GRF5_ORYSJ; Growth-regulating factor 5
TrEMBL	A0A0E0L733	0.0	A0A0E0L733_ORYPU; Uncharacterized protein
STRING	OPUNC06G01050.1	0.0	(Oryza punctata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP11046	24	31

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13960.1	1e-28	growth-regulating factor 5

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]