PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000039G0180
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family bHLH
Protein Properties Length: 496aa    MW: 52675.1 Da    PI: 8.1749
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000039G0180genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH52.87.3e-17290336455
                      HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       hn  ErrRRdriN+++  L+el+P++      K +Ka++L +A+eY+ksLq
  PH01000039G0180 290 VHNLSERRRRDRINEKMRALQELIPHC-----NKTDKASMLDEAIEYLKSLQ 336
                      6*************************8.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474596.67E-21284347IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088818.457286335IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.86E-17289340No hitNo description
Gene3DG3DSA:4.10.280.106.9E-21290344IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.6E-14290336IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.1E-18292341IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009585Biological Processred, far-red light phototransduction
GO:0009693Biological Processethylene biosynthetic process
GO:0010244Biological Processresponse to low fluence blue light stimulus by blue low-fluence system
GO:0010600Biological Processregulation of auxin biosynthetic process
GO:0010928Biological Processregulation of auxin mediated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 496 aa     Download sequence    Send to blast
MNQFVPDWGN MGDTSRPLGE DDDLIELLWC NGHVVMQSQT HRKLPPRPET LQRQRKKMRR  60
DIFSELFCEA PGAAAGTGAD VREAPLGDEK RGGACAVSEA PPRDLMPPPK STHVSCSRQQ  120
TISLADGGDN PGDLSDLVRT GTAGPAGKAA MEAGASSTLS AIGSSICGSN QVQVQRAVSE  180
PGRAGRVSDT ARGGGGAGCA LPSAVGSANA NASGRGHEAT VASSSGRSNY CFGTTTTEPT  240
STSNRSSKRK RLDTEDSESP SEDAESESAA LARKPPQKLT MARRSRAAEV HNLSERRRRD  300
RINEKMRALQ ELIPHCNKTD KASMLDEAIE YLKSLQLQVQ MMWMGSGIAP PMMFPGVHQY  360
LPRMGAVGMG AAAAMTSMPR MPFMTPQPVV PNTAVNPVPL CAPQSHSPSC YGTHMPAVSL  420
PEPYAHYLGV NHLQPSSQHY AQGASYYPLG AKAEQQNPTL DVPSGSIPAA ASQPPRRECC  480
LRKTHQTQDQ GASNS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15258RQRKKMR
25359QRKKMRR
3294299ERRRRD
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00082ChIP-seqTransfer from AT3G59060Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000039G0180
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9566451e-132EU956645.1 Zea mays clone 1569257 PIL5 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025794697.10.0transcription factor PHYTOCHROME INTERACTING FACTOR-LIKE 13-like isoform X1
TrEMBLA0A2T7C3N40.0A0A2T7C3N4_9POAL; Uncharacterized protein
STRINGSi035110m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP31073677
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09530.22e-33phytochrome interacting factor 3