PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys

Family

HD-ZIP

Protein Properties

Length: 311aa MW: 34017.3 Da PI: 4.7093

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PH01000038G2120	genome	ICBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	60.7	2.2e-19	68	120	4	56
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 ++++ eq+++Le+ Fe +++++ ++++++A+ lgL+ rqV vWFqNrRa++k PH01000038G2120 68 KRRLAVEQVRALERSFETDNKLDPDRKARIARDLGLQPRQVAVWFQNRRARWK 120 457889**********************************************9 PP
2	HD-ZIP_I/II	129	1.9e-41	66	158	1	93
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 ekkrrl+ eqv++LE+sFe+++kL+p+rK+++ar+LglqprqvavWFqnrRAR+ktkqlE+d++aL++++dal+++ ++L++++++L++e+++ PH01000038G2120 66 EKKRRLAVEQVRALERSFETDNKLDPDRKARIARDLGLQPRQVAVWFQNRRARWKTKQLERDFAALRARHDALRADCDALRRDKDALAAEIRK 158 69**************************************************************************************99986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	6.27E-19	57	124	IPR009057	Homeodomain-like
SMART	SM00389	1.0E-19	65	126	IPR001356	Homeobox domain
PROSITE profile	PS50071	16.649	66	122	IPR001356	Homeobox domain
CDD	cd00086	2.17E-18	67	123	No hit	No description
Pfam	PF00046	1.4E-16	68	120	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	4.9E-20	74	121	IPR009057	Homeodomain-like
PRINTS	PR00031	2.8E-5	93	102	IPR000047	Helix-turn-helix motif
PROSITE pattern	PS00027	0	97	120	IPR017970	Homeobox, conserved site
PRINTS	PR00031	2.8E-5	102	118	IPR000047	Helix-turn-helix motif
Pfam	PF02183	7.5E-16	122	163	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 311 aa Download sequence Send to blast
MKRQMKRPTS SQESSEPGQK PAFDDKNSLL APYMEHDEAE LEELDDDDDE HAGGRGAPSS 60 SCGLGEKKRR LAVEQVRALE RSFETDNKLD PDRKARIARD LGLQPRQVAV WFQNRRARWK 120 TKQLERDFAA LRARHDALRA DCDALRRDKD ALAAEIRKLT EKLSKPETAV KAEAGNDAAE 180 ERQATVGTSA AAIYKDGFSD SDSSVVFNDE ASPYSVAVLE QPGFIGFGAS FLDSSAATTV 240 CSSLPMLETK WHGTYSYDSY KNGGYGFTEE WLAGSDAIGN DGAGFFSEEH ASNLNFSWCG 300 SGTDGVDLHG *

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	114	122	RRARWKTKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	PH01000038G2120

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020190062.1	1e-144	homeobox-leucine zipper protein HOX13-like
Swissprot	Q10QP3	1e-116	HOX13_ORYSJ; Homeobox-leucine zipper protein HOX13
TrEMBL	A0A453IYQ5	1e-143	A0A453IYQ5_AEGTS; Uncharacterized protein
STRING	Traes_4BL_ECD20BE67.1	1e-143	(Triticum aestivum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4283	31	70

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G65310.2	7e-30	homeobox protein 5

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]