PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys

Family

bHLH

Protein Properties

Length: 298aa MW: 32349.4 Da PI: 8.3279

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PH01000038G2070	genome	ICBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	47.6	3e-15	100	151	1	55
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +r++h ++Er+RR+++N+ ++ Lr+l+P++ ++++ + a+i+ A++Y+k+L+ PH01000038G2070 100 QRMTHIAVERNRRRQMNEYLAVLRSLMPPS---YAQRGDQASIVGGAINYVKELE 151 79**************************...*****************996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	1.43E-15	98	155	No hit	No description
Gene3D	G3DSA:4.10.280.10	1.4E-14	98	155	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	6.54E-18	99	165	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	16.501	99	150	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.9E-12	100	151	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.9E-11	105	156	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 298 aa Download sequence Send to blast
MALEAVVFAQ GHFGYGSCRD SPYALAPWCD VGGSGFGEFC GDYWDHQLAA SVVPSAEEWE 60 AVSRDQSDAS TEGKQPAAAA GRRKRRRTKV AKNKEEIESQ RMTHIAVERN RRRQMNEYLA 120 VLRSLMPPSY AQRGDQASIV GGAINYVKEL EQLLQSLEVQ KSLKNRAGRT DAGHSPFAGF 180 FSFPQFSTSS HGGCGASISG NASNVTMVES HASLKVLARR RPKQLLKLVT GLQQLRIPPL 240 HLNMTTVDAM VLYSFSLKVE DDSKLGSVED IATAVHEILG SIQRQEESGL SSASSST*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	82	86	RKRRR
2	82	87	RKRRRT
3	100	111	RMTHIAVERNRR

Cis-element ? help Back to Top
Source	Link
PlantRegMap	PH01000038G2070

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK107555	2e-99	AK107555.1 Oryza sativa Japonica Group cDNA clone:002-130-B03, full insert sequence.
GenBank	HQ858866	2e-99	HQ858866.1 Oryza sativa Japonica Group isolate UT1675 bHLH transcription factor mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006649528.1	1e-141	PREDICTED: transcription factor bHLH96-like
Refseq	XP_015629273.1	1e-141	transcription factor bHLH96
Swissprot	Q9C7T4	2e-82	BH096_ARATH; Transcription factor bHLH96
TrEMBL	A0A0A9F3U9	1e-144	A0A0A9F3U9_ARUDO; Uncharacterized protein
STRING	OPUNC03G06240.1	1e-141	(Oryza punctata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP741	38	156

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72210.1	1e-67	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]