PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PH01000033G1560 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
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Family | LBD | ||||||||
Protein Properties | Length: 213aa MW: 22588.6 Da PI: 6.6426 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 131.6 | 3.3e-41 | 49 | 148 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 +CaaCk+lrr+Ca++C+lapyfp ++p+kf +h++FGasnv+kll++lpe+ r da+ss+vyeAear+rdPvyG++gv+ +lq+q ++lk++l PH01000033G1560 49 PCAACKILRRRCADGCTLAPYFPPTEPAKFTTAHRVFGASNVIKLLQDLPESSRADAVSSMVYEAEARLRDPVYGCAGVVCRLQKQANELKVQL 142 7********************************************************************************************* PP DUF260 95 allkee 100 a++++e PH01000033G1560 143 ASAQAE 148 *99987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 25.501 | 48 | 149 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 4.1E-41 | 49 | 146 | IPR004883 | Lateral organ boundaries, LOB |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005739 | Cellular Component | mitochondrion |
Sequence ? help Back to Top |
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Protein Sequence Length: 213 aa Download sequence Send to blast |
MDSGSTATNS TAQHYCRSMS PPSRVSSCSP PPVLPPAGNA SSPTVVLSPC AACKILRRRC 60 ADGCTLAPYF PPTEPAKFTT AHRVFGASNV IKLLQDLPES SRADAVSSMV YEAEARLRDP 120 VYGCAGVVCR LQKQANELKV QLASAQAELL NAQAQHANLL ALLCVEFAHH RLDQQQPPLP 180 LDLDGGGGGA AYQPLYDSVL DSAAWDEARL WT* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 2e-41 | 48 | 151 | 10 | 113 | LOB family transfactor Ramosa2.1 |
5ly0_B | 2e-41 | 48 | 151 | 10 | 113 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PH01000033G1560 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU953937 | 1e-142 | EU953937.1 Zea mays clone 1449845 LOB domain protein 11 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020150584.1 | 1e-107 | LOB domain-containing protein 1-like | ||||
Swissprot | Q9LQR0 | 7e-63 | LBD1_ARATH; LOB domain-containing protein 1 | ||||
TrEMBL | A0A287P7F4 | 1e-111 | A0A287P7F4_HORVV; Uncharacterized protein | ||||
STRING | EMT13503 | 1e-106 | (Aegilops tauschii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2645 | 37 | 90 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G07900.1 | 4e-54 | LOB domain-containing protein 1 |