PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000032G0100
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family bHLH
Protein Properties Length: 258aa    MW: 27589.4 Da    PI: 7.5793
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000032G0100genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH14.75.5e-05144184954
                      HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
              HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                       + R +++ +++  L++l+ +      +K + a++L +A+ YIk L
  PH01000032G0100 144 AKVRKEKLGDRITALQQLVSPF-----GKTDTASVLHEAIGYIKFL 184
                      577889999**********998.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088812.297135184IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.79E-12140197IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.1E-5141190IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.2E-9141197IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.18E-6141189No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 258 aa     Download sequence    Send to blast
MAASTRPFRA QQPQPMADED VMNNPLIRDM SHGFLLDQAP LAPSPYGTAP LEGLFDAAAA  60
HNISMLGHCQ SSAGYDATAT AAMQLSQMLK PSVPASTQIQ GAAAHLQYLS GGCMPFGAPL  120
PSQLLLQALH PKPSCSSNAD TLMAKVRKEK LGDRITALQQ LVSPFGKTDT ASVLHEAIGY  180
IKFLHEQVAS LSSPYLKNGN PLRQFQQKSS ENAKDSGEPK QDLRSRGLCL VPVASTYTVA  240
SETVPEFWYP TFGGTFR*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000032G0100
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004970206.11e-109transcription factor bHLH112
RefseqXP_025817271.11e-110transcription factor bHLH110-like isoform X1
RefseqXP_025817273.11e-110transcription factor bHLH110-like isoform X2
TrEMBLA0A446NRZ51e-113A0A446NRZ5_TRITD; Uncharacterized protein
TrEMBLT1LR041e-113T1LR04_TRIUA; Uncharacterized protein
STRINGTRIUR3_07341-P11e-114(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29703464
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20640.13e-44bHLH family protein