PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000031G1000
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family ARR-B
Protein Properties Length: 580aa    MW: 64689.2 Da    PI: 4.8419
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000031G1000genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like81.78.4e-26199252155
          G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                      k+r++W+ +LH++Fv+av+q+ G +k  Pk+il+lm+v+gLt+e+v+SHLQkYRl
  PH01000031G1000 199 KARVVWSVDLHQKFVNAVNQI-GFDKVGPKKILDLMNVPGLTRENVASHLQKYRL 252
                      68*******************.9*******************************8 PP
2Response_reg80.46.1e-27151231109
                      EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHT CS
     Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealka 92 
                      vl+vdD+p+  ++l+++l+k  y ev+++  ++ ale+l+e++  +D+++ D++mp+mdG++ll++i  e  +lp+i+++  ge + + + ++ 
  PH01000031G1000  15 VLVVDDDPTWIKILEKMLRKCSY-EVTTCGLARVALEILRERKnkFDIVISDVNMPDMDGFKLLEHIGLEM-DLPVIMMSIDGETSRVMKGVQH 106
                      89*********************.***************877777**********************6654.8********************* PP

                      TESEEEESS--HHHHHH CS
     Response_reg  93 GakdflsKpfdpeelvk 109
                      Ga d+l Kp+ ++el++
  PH01000031G1000 107 GACDYLLKPVRMKELRN 123
                      **************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0363928.1E-1684574IPR017053Response regulator B-type, plant
SuperFamilySSF521729.53E-3512135IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23001.6E-4312147No hitNo description
SMARTSM004482.5E-3113125IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011042.45214129IPR001789Signal transduction response regulator, receiver domain
PfamPF000723.3E-2415124IPR001789Signal transduction response regulator, receiver domain
CDDcd001569.60E-2916128No hitNo description
PROSITE profilePS512949.161196255IPR017930Myb domain
SuperFamilySSF466893.31E-18196256IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.7E-28198257IPR009057Homeodomain-like
TIGRFAMsTIGR015571.0E-22199252IPR006447Myb domain, plants
PfamPF002499.1E-8201251IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0009735Biological Processresponse to cytokinin
GO:0010082Biological Processregulation of root meristem growth
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 580 aa     Download sequence    Send to blast
MALPDATAFP YGLRVLVVDD DPTWIKILEK MLRKCSYEVT TCGLARVALE ILRERKNKFD  60
IVISDVNMPD MDGFKLLEHI GLEMDLPVIM MSIDGETSRV MKGVQHGACD YLLKPVRMKE  120
LRNIWQHVYR KKMHEVKEIE GHDSGHDSCD DLQLLRNGFE GFDEKSLFMR ADSDTMRKRK  180
DVDKDHADQE SSDGATVKKA RVVWSVDLHQ KFVNAVNQIG FDKVGPKKIL DLMNVPGLTR  240
ENVASHLQKY RLYLSRLQKQ TEERILGAAR QDFSHKGPSD NLGSSFQEQP SNIANVYPHA  300
SQNSMLDSQL EDTKSTVPLP VSDKNRTPVS DVADSQNVAD ASPLGGLLSF KGLPVNQDRK  360
PSETMILECQ AWSGGLPSKQ FMQYPKHNHE RCDLLGDYSC LPKPDLEHPI APSHLFTPPP  420
LISMSCSMEG DARDFSDVKP ALLNCIKSLS PALTCTVDSV SVQLSDSVVT STDGYIKFSS  480
EGSPSIKDCY FDQTNNQGTL LPSQEPSTIC GTDLASLPED MPSYPLQGVS FENIGLSSID  540
LFHYNDTTIL SGVQSNWYDD LEYSSETMDY PLIDECLFA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A1e-17198257463ARR10-B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00010PBMTransfer from AT1G67710Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000031G1000
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015622017.10.0two-component response regulator ORR26 isoform X1
SwissprotQ5N6V80.0ORR26_ORYSJ; Two-component response regulator ORR26
TrEMBLA0A0D9V9720.0A0A0D9V972_9ORYZ; Two-component response regulator
STRINGORUFI01G44260.20.0(Oryza rufipogon)
STRINGOS01T0904700-010.0(Oryza sativa)
STRINGORGLA01G0348700.10.0(Oryza glaberrima)
STRINGOBART01G40940.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP59003752
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67710.11e-113response regulator 11
Publications ? help Back to Top
  1. Du L, et al.
    The two-component signal system in rice (Oryza sativa L.): a genome-wide study of cytokinin signal perception and transduction.
    Genomics, 2007. 89(6): p. 697-707
    [PMID:17408920]