|
Plant Transcription
Factor Database
|
Transcription Factor Information
Basic
Information? help
Back to Top |
TF ID |
PH01000022G0050 |
Organism |
|
Taxonomic ID |
|
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
|
Family |
ERF |
Protein Properties |
Length: 175aa MW: 18839.8 Da PI: 4.2612 |
Description |
ERF family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
PH01000022G0050 | genome | ICBR | View CDS |
|
Signature Domain? help Back to Top |
|
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | AP2 | 58 | 2.4e-18 | 11 | 59 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55
y+GVr++ +g+WvAeIr+p + +r++lg+f+ta +Aa a+++a+++++
PH01000022G0050 11 YRGVRQRL-WGKWVAEIREP-----NhgRRHWLGTFDTAVDAALAYDRAARAIHS 59
9****999.**********9.....336***********************9985 PP
|
Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0003677 | Molecular Function | DNA binding |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 175 aa
Download sequence Send
to blast |
MGGPENMKHN YRGVRQRLWG KWVAEIREPN HGRRHWLGTF DTAVDAALAY DRAARAIHSP 60 LAPVNFPAVS TAAAPGQCEP ASCSLSAAAV SVFEEHEVEP VPAQGGCTGN AQHRDASSAA 120 PEEMFADYLD DIAMYIDVDA VTEMVASYPD IKSEDWQVDE LDTDVVDSPL WGAG*
|
Functional Description ? help
Back to Top |
Source |
Description |
UniProt | Probable transcriptional activator that binds to the DNA sequence 5'-[AG]CCGAC-3' of the cis-acting dehydration-responsive element (DRE). {ECO:0000250}. |
Annotation --
Nucleotide ? help
Back to Top |
Source |
Hit ID |
E-value |
Description |
GenBank | AC135924 | 4e-41 | AC135924.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone P0486C01, complete sequence. |
GenBank | AK102559 | 4e-41 | AK102559.1 Oryza sativa Japonica Group cDNA clone:J033097H15, full insert sequence. |
GenBank | AK103822 | 4e-41 | AK103822.1 Oryza sativa Japonica Group cDNA clone:J033147H24, full insert sequence. |
GenBank | AK109855 | 4e-41 | AK109855.1 Oryza sativa Japonica Group cDNA clone:002-148-G01, full insert sequence. |
GenBank | AP014961 | 4e-41 | AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence. |
GenBank | CP012613 | 4e-41 | CP012613.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 5 sequence. |
GenBank | CT834242 | 4e-41 | CT834242.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA109B04, full insert sequence. |