PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000010G2680
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family C2H2
Protein Properties Length: 651aa    MW: 68548.6 Da    PI: 4.9087
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000010G2680genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.93.6e-05539564123
                      EEET..TTTEEESSHHHHHHHHHH.T CS
          zf-C2H2   1 ykCp..dCgksFsrksnLkrHirt.H 23 
                      ++C+  +C+++F+++ +L +H ++ +
  PH01000010G2680 539 FECGidYCSMTFKTRAELSVHKKNmC 564
                      89*******************99866 PP
2zf-C2H214.10.00014622646123
                      EEET..TTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                      ykC+   Cgk ++  s+++rH r++
  PH01000010G2680 622 YKCTtpGCGKIYKYVSDFTRHRRRC 646
                      99*********************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM0035529539561IPR015880Zinc finger, C2H2-like
SMARTSM003553.4562586IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.614562591IPR007087Zinc finger, C2H2
SuperFamilySSF576676.83E-6562599No hitNo description
Gene3DG3DSA:3.30.160.602.2E-4563585IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280564586IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.607.4E-12586613IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003559.6E-4592616IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015713.339592621IPR007087Zinc finger, C2H2
PROSITE patternPS000280594616IPR007087Zinc finger, C2H2
SuperFamilySSF576671.3E-10602644No hitNo description
Gene3DG3DSA:3.30.160.603.3E-11614644IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM0035515622644IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.099622650IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 651 aa     Download sequence    Send to blast
MRIRRYAARL LASTAPSSPP PQPASPWFHT AADDCAFCEL SCSAPQEVIL PRLVGVLMAG  60
CSAESQVAPN AIKQKGHIAG RVQEAELKSD ERIGLAHRPP VAEAQGCEID DEPPVSKAAA  120
GLEVARGASG VSGAAARPEG TGRASLVSEA ATEPTTTGGA FIVNEATGEQ EVKGATSLVD  180
ESVAEPEVTG RASLVNGSIT EPEVLREASP ASVAVTEPEV SERVSLASEA ATEAAVIVTV  240
PELTGGDEGA AEPEVTSGAS LVNESAGRME VIRGASLVNE AATEPRLTER VSLVSEAVTE  300
PGVTGAASLD NESAVEPEAT GGASLANEAA ELEITGGAYI ANEADAEPEV TGGAPACCGD  360
GDAALDEPRP SDCDMEIVDV QVRNAGEAVA STVQPSRDNA ADFVGSVNST SNGPVRAKSP  420
TAEEVAPHDG CIDTPSVSCV SDIVARSVGK SARTDIICYA RRRGKRKLEM VEGKTEQFEM  480
DDGAIYGQCK QKVTLERAGP CESAMSTAGS TEIKIADIKR ELVNNSAASN GKKMKIQRFE  540
CGIDYCSMTF KTRAELSVHK KNMCTVKSCS RHFRSHKYLR RHQSIHNDEM PYTCPWEGCS  600
MAFKSTWALA EHFHVHTGEK PYKCTTPGCG KIYKYVSDFT RHRRRCKPQR *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6a57_A1e-3853964523129Lysine-specific demethylase REF6
6a58_A1e-3853964523129Lysine-specific demethylase REF6
6a59_A1e-3853964523129Lysine-specific demethylase REF6
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1460466RRRGKRK
2460467RRRGKRKL
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000010G2680
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024311081.10.0uncharacterized protein LOC100837146 isoform X4
TrEMBLJ3LK100.0J3LK10_ORYBR; Uncharacterized protein
STRINGOB03G13860.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP114913241
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04240.12e-37C2H2 family protein