PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys

Family

MYB

Protein Properties

Length: 308aa MW: 34411.2 Da PI: 5.4105

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PH01000008G3080	genome	ICBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	47.7	3.6e-15	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd++l+ + G +W+++++ g+ R++k+c++rw +yl PH01000008G3080 14 KGPWTAEEDQKLISFILSNGQCCWRAVPKLAGLLRCGKSCRLRWTNYL 61 79****************************99**********97 PP
2	Myb_DNA-binding	52.2	1.4e-16	71	111	5	47
-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 5 TteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 ++ E++ +d+++qlG++ W++Ia++++ gRt++++k++w+++ PH01000008G3080 71 SEAEEKVVIDLHAQLGNR-WSKIASHLP-GRTDNEIKNHWNTH 111 899*************.*****.**********97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.7E-20	5	63	IPR009057	Homeodomain-like
PROSITE profile	PS51294	14.639	9	61	IPR017930	Myb domain
SuperFamily	SSF46689	1.35E-26	11	108	IPR009057	Homeodomain-like
SMART	SM00717	4.4E-12	13	63	IPR001005	SANT/Myb domain
Pfam	PF00249	4.0E-14	14	61	IPR001005	SANT/Myb domain
CDD	cd00167	8.01E-9	16	61	No hit	No description
PROSITE profile	PS51294	26.528	62	116	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	1.1E-24	64	117	IPR009057	Homeodomain-like
SMART	SM00717	6.7E-15	66	114	IPR001005	SANT/Myb domain
Pfam	PF00249	3.1E-14	70	111	IPR001005	SANT/Myb domain
CDD	cd00167	1.76E-11	71	112	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009737	Biological Process	response to abscisic acid
GO:2000652	Biological Process	regulation of secondary cell wall biogenesis
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 308 aa Download sequence Send to blast
MGRQPCCDKV GLKKGPWTAE EDQKLISFIL SNGQCCWRAV PKLAGLLRCG KSCRLRWTNY 60 LRPDLKRGLL SEAEEKVVID LHAQLGNRWS KIASHLPGRT DNEIKNHWNT HVKKKLKKMG 120 IDPLTHKPLP PAPQKQHDRH TPLAGGSPEI QGPRPEQKPP EEENLEAAAN MHDEESLLRK 180 SPGFCTDEVP MIHPDEIMVP LCDQPQPPPP PPPTPTCAAA VSAPTTSSSS SASTSCDEDT 240 LFPIMEWPDI MYLMGLDDMI AAAPSPWDEW LVEPPAPPVY EDTFNDAYQY QRSSAAFDQE 300 AWSKLELF

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1a5j_A	3e-29	12	116	5	108	B-MYB
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that acts as positive regulator of abscisic acid (ABA) signaling in response to salt stress. Acts as negative regulator ABI1, ABI2 and PP2CA, which are protein phosphatases 2C acting as negative regulator of ABA signaling. Binds to the DNA specific sequence and core element 5'-ACGT-3' found in the promoters of ABI1 and PP2CA to negatively regulate their expression during ABA-dependent salt stress response. {ECO:0000269\|PubMed:23660402}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00513	DAP	Transfer from AT5G16600	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	PH01000008G3080

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by salt stress, drought stress and abscisic acid (ABA). Down-regulated by salicylic acid (SA) methyl jasmonate (JA). {ECO:0000269\|PubMed:23660402}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	FP092606	0.0	FP092606.1 Phyllostachys edulis cDNA clone: bphylf044c24, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004973482.1	1e-121	myb-related protein 315
Swissprot	Q9C7U7	2e-88	MYB20_ARATH; Transcription factor MYB20
TrEMBL	A0A0E0LUS9	1e-120	A0A0E0LUS9_ORYPU; Uncharacterized protein
STRING	OPUNC08G12780.1	1e-121	(Oryza punctata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP79	38	563

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G16600.1	1e-92	myb domain protein 43

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]