PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000004G1630
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family NAC
Protein Properties Length: 202aa    MW: 22120.6 Da    PI: 4.5942
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000004G1630genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM102.65.3e-3251161106
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk......kvkaeekewyfFskrdkkyatgkrknratksgyWkatgk 88 
                      +ppG+rF Pt+eel+++yL++k+++++ ++e+vi+ vd+y+v+Pw+Lp+        ++e + w++F++r++++a+g r++r+t sgyWka g+
  PH01000004G1630   5 MPPGYRFYPTEEELICFYLRNKLDSRRDDIERVIPVVDVYSVDPWQLPEiherlcGGASEGEPWFYFCPRQEREARGGRPSRTTPSGYWKAAGT 98 
                      79****************************99***************9646665433336779******************************* PP

              NAM  89 dkevlskkgelvglkktL 106
                         v+s+++  +g+kkt+
  PH01000004G1630  99 PSVVYSAGRCPIGIKKTM 116
                      ******999********9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019416.41E-364129IPR003441NAC domain
PROSITE profilePS5100530.1475175IPR003441NAC domain
PfamPF023655.5E-166116IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 202 aa     Download sequence    Send to blast
MADGMPPGYR FYPTEEELIC FYLRNKLDSR RDDIERVIPV VDVYSVDPWQ LPEIHERLCG  60
GASEGEPWFY FCPRQEREAR GGRPSRTTPS GYWKAAGTPS VVYSAGRCPI GIKKTMLRSE  120
FSLCRLYTKS GSLRQFDRRP LAAAAGGAGE NPGPSTAAAS SPDDDDGSGG SMQQSQQQEQ  180
MEGGDGDPYG DDMATWAALL Y*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A3e-20412314140Stress-induced transcription factor NAC1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000004G1630
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0712741e-108AK071274.1 Oryza sativa Japonica Group cDNA clone:J023087C18, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020158560.19e-94NAC domain-containing protein 90-like
SwissprotQ9FMR39e-49NAC90_ARATH; NAC domain-containing protein 90
TrEMBLA0A3B6ELR44e-95A0A3B6ELR4_WHEAT; Uncharacterized protein
TrEMBLA0A446NVB24e-95A0A446NVB2_TRITD; Uncharacterized protein
STRINGEMT139754e-93(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP100538140
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22380.17e-51NAC domain containing protein 90
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]