PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000004G1210
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family bHLH
Protein Properties Length: 846aa    MW: 90733.1 Da    PI: 6.3293
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000004G1210genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH120.00046486851355
                      HHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH  13 RdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      R+ i +++ eLre++P++      K s  + Lek+++++  Lq
  PH01000004G1210 648 RQMIQDRIKELREIVPNS-----AKCSIDALLEKTIKHMLFLQ 685
                      77899************6.....5999999********99998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142151.1E-2025127IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088810.417635684IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000830.00458648685No hitNo description
Gene3DG3DSA:4.10.280.104.5E-4648688IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 846 aa     Download sequence    Send to blast
MDLLLKGKAA ALRSGRGEGH APEGAAGHAQ DRVDALVHKA MAHQAHVVGE GVIGQAALTG  60
AHRWILHDSL DECGEADEVL LDMKDQFCAG IQTVAVIPVL PQGVIQLGST KMVMEEAALI  120
DHVRSLFGQL GSSTAVVPHS SFLQDPITKT LVHNSHRVPT SLHLGDLPGG VNASSPNDDR  180
INHHFRHLMS PASMIQSFHP VQQFHAGAAF CRPVTLASCC DFFQPLVQSD HGSTFLLNSQ  240
SDGNKSTVQL KNNVSYSDTS HDTFPRASGS LKEPNITISD RRKCLSVEQR GSCLKGGMYI  300
TKSDAIASSC TGETCILNKV DALTSQDHSV DFQTSNATSV NRKFQTMSIA DNTKHEGESF  360
ACSDAPFIDS ARYSNCFQSL LGTLQGSVSS NSNAIHGETS HNAVSGENNF CSVEGRNTGS  420
SSDLPELLAS PIPSQLTGGS DLFDALQLQQ KPRGLNGSEV NNPESVSCGL EQAVKSLTGG  480
MNDGFIGLIT EPDPDELLDA IVSKMSTGHK QNLDASVSCS TSVANVDNLS YHSSCRPYTT  540
GSSSGQLFCN LPGVSPISVK TEVPAASFGQ SSCSTDKSEG CSQRQQGYKS QIRLWVENSQ  600
SVPSDSLSAG LPSDGLSAGQ CKRFDEIGKS SRKRPRPGDN PRPKPKDRQM IQDRIKELRE  660
IVPNSAKCSI DALLEKTIKH MLFLQSVAKH ADKLKESGEP KIISQEGGLL LKDNFEGGAT  720
WAFEVGTQSM TCPIIVEDLS PPRQMLVEML CKERGIFLEI ADQIRSLGLT IFKGVMEVRK  780
DKIWARFAVE ANKDVTRMEI FLSLVHLLEP STGSSMLPAG VENISLPRDS FYPSSIPATG  840
FSNGL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1632636KRPRP
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000004G1210
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015619837.10.0transcription factor LHW isoform X4
TrEMBLA0A0E0JRF30.0A0A0E0JRF3_ORYPU; Uncharacterized protein
STRINGOPUNC01G37140.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP161891314
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31280.12e-51conserved peptide upstream open reading frame 7