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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PH01000000G7400 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
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Family | GRAS | ||||||||
Protein Properties | Length: 650aa MW: 68992.8 Da PI: 6.507 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 269.1 | 1.4e-82 | 290 | 648 | 2 | 374 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 + L+++A+a + g+ a+++L+rl+++ p g+p+ R a+y++eAL la+ + +++ ts+ +++ +laa+k fs++sP+l+f++ PH01000000G7400 290 LDELTAAAKAAEVGNSIGAREILTRLNQQLPPIGKPFLRSASYLKEALLLALAD-----GHHGSTRLTSPLDVALKLAAYKSFSDLSPVLQFAN 378 5789**************************************************.....6666788888888********************** PP GRAS 96 ltaNqaIleavege..ervHiiDfdisqGlQWpaLlqaLasRp....egppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlva 183 +ta qa+l++++ +++ iiDfd + G+QW+++lq+La R + p+l++T+++s++s++ el t++++++fA+ lg+pfefn++ PH01000000G7400 379 FTATQALLDEIACTtaSCIRIIDFDFGVGGQWASFLQELAHRGgtggVPLPMLKLTAFVSSASHHPLELLLTRDNISQFAADLGIPFEFNAI-- 470 *********87755559*************************977555689***********9****************************9.. PP GRAS 184 krledleleeLrvkp.gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklp 276 +++ +++ eL + +E++aV+l + +l+ +L+lvk+l Pk+vv +++ +d+++ +F ++fl++++ ++ l+dsl+a + PH01000000G7400 471 -NFDVFDPTELVAPTvDEVVAVSLPVGCSART---PPLP----VLLQLVKQLAPKIVVAIDHGSDRGDLPFSQHFLNCFQSCMFLLDSLDAA-G 555 .9*********77779*********9766554...5555....5*********************************************999.8 PP GRAS 277 reseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsv 370 +++e+++k+Er+l++++++++v + ++ +++ Wr l +aGF pvpls+ a++qa++ll++v+++g++ve++ l l+W++ +Lvsv PH01000000G7400 556 ADAEAASKIERFLIQPRVEDAVLGRCRA-----DKAMAWRTVLASAGFAPVPLSNLAEAQADCLLKRVQVRGFHVEKRGVDLALYWQRGELVSV 644 999*******************987776.....8899********************************************************* PP GRAS 371 SaWr 374 SaWr PH01000000G7400 645 SAWR 648 ***8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 42.033 | 263 | 628 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 4.9E-80 | 290 | 648 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 650 aa Download sequence Send to blast |
MRAVPFRAEV NGVVELARSL EVLLWPEDKG GGRLLVEPTS VLDCRWSPSP PNSTSTLSSS 60 LGGGSAADST GVATVSENST AAAEATKWAA PGKHGGGGGG GGGRKEEWSG SELSPIPGAL 120 DHHPGGAASH AALASDLSSP GARLLTSSNS KATSTFGLLS PEAALQPPPA MTMPFHDGAD 180 IKPPRLGVPS PSLLLNQHQP MPAATFFMPL PSFPDHQQQP LLQPPPKRHH SMPDNLFLLQ 240 NQLQPPPLPT QCLPFPPLHN TTPFQLWPSP QPPRSAMKTT SAAQQQQQLL DELTAAAKAA 300 EVGNSIGARE ILTRLNQQLP PIGKPFLRSA SYLKEALLLA LADGHHGSTR LTSPLDVALK 360 LAAYKSFSDL SPVLQFANFT ATQALLDEIA CTTASCIRII DFDFGVGGQW ASFLQELAHR 420 GGTGGVPLPM LKLTAFVSSA SHHPLELLLT RDNISQFAAD LGIPFEFNAI NFDVFDPTEL 480 VAPTVDEVVA VSLPVGCSAR TPPLPVLLQL VKQLAPKIVV AIDHGSDRGD LPFSQHFLNC 540 FQSCMFLLDS LDAAGADAEA ASKIERFLIQ PRVEDAVLGR CRADKAMAWR TVLASAGFAP 600 VPLSNLAEAQ ADCLLKRVQV RGFHVEKRGV DLALYWQRGE LVSVSAWRC* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5hyz_A | 1e-25 | 289 | 648 | 4 | 375 | GRAS family transcription factor containing protein, expressed |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PH01000000G7400 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015637143.1 | 0.0 | scarecrow-like protein 27 | ||||
TrEMBL | A0A0D3FYR6 | 0.0 | A0A0D3FYR6_9ORYZ; Uncharacterized protein | ||||
STRING | OBART04G21150.1 | 0.0 | (Oryza barthii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2020 | 37 | 96 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G00150.1 | 2e-74 | GRAS family protein |