PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PH01000000G4160

Organism

Phyllostachys heterocycla

Taxonomic ID

38705

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys

Family

Dof

Protein Properties

Length: 352aa MW: 35241.8 Da PI: 8.282

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PH01000000G4160	genome	ICBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	125.3	1.9e-39	62	123	2	63
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkksss 63 kekal+cprC+stntkfCyynnysl+qPryfCk+CrryWt+GG+lrnvPvGgg+rknk+sss PH01000000G4160 62 KEKALNCPRCKSTNTKFCYYNNYSLQQPRYFCKTCRRYWTEGGSLRNVPVGGGSRKNKRSSS 123 7899******************************************************9875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	1.0E-29	58	120	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	2.8E-33	64	120	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.91	66	120	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	68	104	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 352 aa Download sequence Send to blast
MEEMLMAASA NQGSNPNPPA SAPSSGGGLR GAAPAVEGAG SGAGAGAGAG AGSTERRARL 60 QKEKALNCPR CKSTNTKFCY YNNYSLQQPR YFCKTCRRYW TEGGSLRNVP VGGGSRKNKR 120 SSSSSSSSST TTSVTSSSMA SMAGVASKNP NLAHEGAQDL NLSFPHHGGL HAPSEFVAFP 180 SLESSSVCNP GGAMASNGRA GGTLSAMELL RSTGCYMPLQ VPMQMPGEYA AAGFTLGEFR 240 APPPPPPSQS VFGFSLDAHG SVGGASAAGY GSSTGLQGVP ESAGRLLFPF EDLKPTVSSG 300 GGDGASGGGS GAGVDGGHQF EQGKEQGSGP PGGQHDTPGF WNGMIGGGTS W*

Sequence ? help Back to Top

Protein Sequence Length: 352 aa Download sequence Send to blast

MEEMLMAASA NQGSNPNPPA SAPSSGGGLR GAAPAVEGAG SGAGAGAGAG AGSTERRARL  60
QKEKALNCPR CKSTNTKFCY YNNYSLQQPR YFCKTCRRYW TEGGSLRNVP VGGGSRKNKR  120
SSSSSSSSST TTSVTSSSMA SMAGVASKNP NLAHEGAQDL NLSFPHHGGL HAPSEFVAFP  180
SLESSSVCNP GGAMASNGRA GGTLSAMELL RSTGCYMPLQ VPMQMPGEYA AAGFTLGEFR  240
APPPPPPSQS VFGFSLDAHG SVGGASAAGY GSSTGLQGVP ESAGRLLFPF EDLKPTVSSG  300
GGDGASGGGS GAGVDGGHQF EQGKEQGSGP PGGQHDTPGF WNGMIGGGTS W*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that may transactivate seed storage protein genes in developing seeds. {ECO:0000250\|UniProtKB:Q6K537}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	PH01000000G4160

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KC582413	1e-146	KC582413.1 Sorghum bicolor dof20 protein (dof20) gene, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020147699.1	1e-139	dof zinc finger protein DOF4.6-like isoform X2
Refseq	XP_020147700.1	1e-139	dof zinc finger protein DOF4.6-like isoform X2
Swissprot	Q9SXG8	1e-133	DOF1_ORYSJ; Dof zinc finger protein 1
TrEMBL	A0A0A9GUS7	1e-148	A0A0A9GUS7_ARUDO; Uncharacterized protein
STRING	Traes_2AL_189D6889B.1	1e-143	(Triticum aestivum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2369	34	86

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24060.1	8e-43	Dof family protein

Publications ? help Back to Top
Washio K Identification of Dof proteins with implication in the gibberellin-regulated expression of a peptidase gene following the germination of rice grains. Biochim. Biophys. Acta, 2001. 1520(1): p. 54-62 [PMID:11470159]