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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PGSC0003DMP400068248 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | C2H2 | ||||||||
Protein Properties | Length: 154aa MW: 17780 Da PI: 7.982 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 15.4 | 5.5e-05 | 71 | 93 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C +Cgk F + + ++H +++ PGSC0003DMP400068248 71 FNCRKCGKNFAVRGDWRTHEKNC 93 78*****************9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 2.25E-6 | 56 | 91 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 1.0E-5 | 57 | 91 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 8.6 | 71 | 91 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010087 | Biological Process | phloem or xylem histogenesis | ||||
GO:0010305 | Biological Process | leaf vascular tissue pattern formation | ||||
GO:0010588 | Biological Process | cotyledon vascular tissue pattern formation | ||||
GO:0048364 | Biological Process | root development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 154 aa Download sequence Send to blast |
MQMHMWGHGS QYRKGPDSLK GTKQASSMLR LPCYCCAEGC KNSIDHPRSK PLKDFRTLQT 60 HYKRKHGAKP FNCRKCGKNF AVRGDWRTHE KNCGKIWFCI CGSDFKHKRS LKDHVKAFGD 120 GHAPHSENSY YHVEGDEDEE EEDDNDEIME MEL* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcriptional regulator (Probable). Involved in leaf vasculature patterning (PubMed:18643975). {ECO:0000269|PubMed:18643975, ECO:0000305|PubMed:20541552}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PGSC0003DMP400068248 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975517 | 0.0 | HG975517.1 Solanum lycopersicum chromosome ch05, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006362569.1 | 1e-114 | PREDICTED: zinc finger protein WIP6-like | ||||
Swissprot | Q9FX68 | 7e-82 | ZWIP6_ARATH; Zinc finger protein WIP6 | ||||
TrEMBL | M1DYR7 | 1e-111 | M1DYR7_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400096573 | 1e-112 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA462 | 24 | 133 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G13290.1 | 3e-83 | C2H2-like zinc finger protein |
Link Out ? help Back to Top | |
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Phytozome | PGSC0003DMP400068248 |
Publications ? help Back to Top | |||
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