PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400067807
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family B3
Protein Properties Length: 337aa    MW: 39213.5 Da    PI: 4.7549
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400067807genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B350.15e-16590192
                          EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
                    B3  1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91
                          ffkv+  +   + +r+ +p  ++ +++ +++ +++++l+d+ g+ W +++  +k+++ ++++ GW++F ++n+++  Df++F +dg+ +f 
  PGSC0003DMP400067807  5 FFKVF--NPEISAKRMKIPTGYT-NYK-NEKLPRKVSLRDRYGNMWPIRV--TKQGRDIYFKYGWEKFIEDNNMEFADFLIFDYDGKGTFD 89
                          88888..77788889*******9.775.456999****************..********************************9977664 PP

                          . CS
                    B3 92 l 92
                          +
  PGSC0003DMP400067807 90 F 90
                          4 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.104.3E-18397IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.535396IPR003340B3 DNA binding domain
PfamPF023623.5E-14590IPR003340B3 DNA binding domain
SMARTSM010194.2E-9596IPR003340B3 DNA binding domain
SuperFamilySSF1019367.65E-19598IPR015300DNA-binding pseudobarrel domain
CDDcd100175.27E-12593No hitNo description
CDDcd100171.46E-6205267No hitNo description
SuperFamilySSF1019362.16E-8207267IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.0E-6208267IPR015300DNA-binding pseudobarrel domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 337 aa     Download sequence    Send to blast
MEKGFFKVFN PEISAKRMKI PTGYTNYKNE KLPRKVSLRD RYGNMWPIRV TKQGRDIYFK  60
YGWEKFIEDN NMEFADFLIF DYDGKGTFDF KLLGINGCVK NGAGGKKKGE EMNVEHEKSV  120
ESKEKTWVSD SSNSFFDYDS DEHYIVEEEV VKEDVEMKQE THKRASCSKR RYVEEEEDEK  180
REGEGEEKEA QEEEDEEENE GAGTYTKKYI PMDVLRDYKL ELPPSMTIRD SAGREFETRV  240
TKWTDGRIWL LGGWRNLARF NLVEKDDRHH PRTVDGLTVR PADQVTDRSS CPWIDAPKAQ  300
LQSQLTVDQH GPSFDPRSVL DLQFSSISGE SSFFED*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1yel_A3e-142988104At1g16640
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400067807
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027770100.11e-103B3 domain-containing protein At5g60140-like
TrEMBLM1DXS30.0M1DXS3_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000961320.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10912264
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G16640.11e-16B3 family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]