PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400067141
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family C2H2
Protein Properties Length: 271aa    MW: 29563.2 Da    PI: 8.7654
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400067141genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.30.000532042223
                          EETTTTEEESSHHHHHHHHHH.T CS
               zf-C2H2  2 kCpdCgksFsrksnLkrHirt.H 23
                          +Cp C   F++++++++H rt H
  PGSC0003DMP400067141 20 RCPLCYGAFRTHMEFMNHVRTtH 42
                          8********************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE patternPS0002802142IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 271 aa     Download sequence    Send to blast
MNNANLSPPS SLLRCRVFLR CPLCYGAFRT HMEFMNHVRT THLLLSERNI ILCSHAYASN  60
TLSPANPLGS NLAAPQHASS QNVIQHSSGY PSGTLLRENM LSAQSTTPQH ASPQNVILRP  120
PLYSSGPLLL GNLSSVQHAV PQHANLQNVI QRSPLYGSGN FFTGNMSSHQ PTAPQHVSSR  180
TNDNVVIPPT LSSNRNNPIR SDRAPPIDWQ PMARSNRVGG PNSTFLNSNE SIIDCTRPLI  240
NQLNVRVSAN VDESINIADE QNDLDLTLRL *
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400067141
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754481e-179HG975448.1 Solanum pennellii chromosome ch09, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLM1DWD10.0M1DWD1_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000954660.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA1508233
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]