PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400066245
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family MYB
Protein Properties Length: 371aa    MW: 41888.2 Da    PI: 6.5148
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400066245genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.41.2e-164288148
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
       Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                          +g WT eEd +l+++vkq+G + W+ Ia++m   R +kqc++rw+++l
  PGSC0003DMP400066245 42 KGQWTDEEDRKLLRLVKQFGVRKWAQIAEKME-ARAGKQCRERWHNHL 88
                          799*****************************.*************97 PP
2Myb_DNA-binding55.81.1e-1794136145
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
       Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                           ++ W++eE++llv+ +kqlG++ W+ Ia++++ gRt++ +k++w+
  PGSC0003DMP400066245  94 KDTWSEEEELLLVESHKQLGNK-WAEIAKRIP-GRTENAIKNHWN 136
                           679*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512935.279112IPR017884SANT domain
PROSITE profilePS5129427.1613792IPR017930Myb domain
SuperFamilySSF466892.79E-2941135IPR009057Homeodomain-like
SMARTSM007175.2E-154190IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.8E-264395IPR009057Homeodomain-like
CDDcd001679.70E-154588No hitNo description
PfamPF139211.1E-1945104No hitNo description
SMARTSM007172.3E-1693141IPR001005SANT/Myb domain
PROSITE profilePS5129419.83593143IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.4E-2096141IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 371 aa     Download sequence    Send to blast
MEGFYMNEIQ ENNGLFDHEK NKVKESGKKV KEGNSSTNYL IKGQWTDEED RKLLRLVKQF  60
GVRKWAQIAE KMEARAGKQC RERWHNHLRP DIKKDTWSEE EELLLVESHK QLGNKWAEIA  120
KRIPGRTENA IKNHWNATKR RQNSRRNKNK KNQQGDDDTQ CERKSSSSRS TVLQDYIISK  180
YFMSDDNSPP TATPFYGGGG GTYSGGGCSW ADVSRPPPPP PATTFTGSTP PYSEDDSPSL  240
MTHQTHDEEM NFMQSLFGHN NNITTIETQV VTQDLLNKSS SGLNSFNENP ITQCNVESYT  300
PQYYPPDLYL SYLLDGSNYQ DCFGCGSMNN TNQGCSTSGG GNIKEVDLME MINSTNSQLS  360
QAGTFNKTFF *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C2e-43401422104C-Myb DNA-Binding Domain
1msf_C2e-43401422104C-Myb DNA-Binding Domain
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00567DAPTransfer from AT5G58850Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400066245
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755181e-177HG975518.1 Solanum lycopersicum chromosome ch06, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010322952.20.0transcription factor MYB119
TrEMBLA0A1U8GYC31e-163A0A1U8GYC3_CAPAN; transcription factor MYB51-like
STRINGSolyc06g076840.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA48251941
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58850.13e-55myb domain protein 119