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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PGSC0003DMP400065699 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 184aa MW: 20843.5 Da PI: 5.6652 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 63.9 | 1.8e-20 | 2 | 45 | 4 | 47 |
-SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEE CS SRF-TF 4 enksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkly 47 +n++n+qvtfskR g++ KA+EL++LC+a v v+ifss++k+y PGSC0003DMP400065699 2 KNSRNKQVTFSKRHIGLFRKASELCTLCGAYVVVVIFSSSNKVY 45 79****************************************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 1.3E-16 | 1 | 50 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 19.077 | 1 | 51 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 9.68E-20 | 2 | 64 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 3.1E-20 | 2 | 46 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 6.6E-7 | 13 | 28 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 6.6E-7 | 28 | 49 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 184 aa Download sequence Send to blast |
MKNSRNKQVT FSKRHIGLFR KASELCTLCG AYVVVVIFSS SNKVYSCGHP SVELIVDKFL 60 RENPQPDSDS PNPTIVAHQN LNVDEINNEL NKLENSLERQ KKHGEALKSL RNELAYEQLN 120 FFNLKMSSKI LVATDEEVER VAGQLMECNI EFPYQTIRSA LDPLRVEENC LSDFDEGPSR 180 SHE* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PGSC0003DMP400065699 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006340409.1 | 3e-90 | PREDICTED: agamous-like MADS-box protein AGL62 | ||||
TrEMBL | M1DT80 | 1e-132 | M1DT80_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400094024 | 1e-133 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA204 | 24 | 223 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60440.1 | 2e-24 | AGAMOUS-like 62 |
Link Out ? help Back to Top | |
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Phytozome | PGSC0003DMP400065699 |
Publications ? help Back to Top | |||
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