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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PGSC0003DMP400064726 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | B3 | ||||||||
Protein Properties | Length: 143aa MW: 15904.2 Da PI: 5.299 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 41.2 | 3e-13 | 27 | 118 | 4 | 98 |
E-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-.SS. CS B3 4 vltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkld.gr. 87 +lt+s v + l+lpkk +e ++ + + + ++W++++ + +++ ++++GW++Fv+ n+LkegD +vF+l+ + PGSC0003DMP400064726 27 ILTKSAVKPTYSLYLPKKMNKELpsA-----GVPV-VLTCGRKKWNLYY--GGARSTyKFISTGWRKFVDGNNLKEGDGLVFELSeCSt 107 57888899999999***998777432.....3334.455688*******..666666568899********************986555 PP SEE..EEEEE- CS B3 88 sefelvvkvfr 98 s+ e++v+++r PGSC0003DMP400064726 108 SKIEFRVQILR 118 77788888776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 1.55E-16 | 20 | 118 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 1.5E-14 | 21 | 118 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 12.619 | 24 | 120 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 3.78E-15 | 27 | 118 | No hit | No description |
Pfam | PF02362 | 4.8E-11 | 27 | 118 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 3.3E-6 | 28 | 120 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 143 aa Download sequence Send to blast |
MMESIGSSEI DNDEYWPLSG KPYVDIILTK SAVKPTYSLY LPKKMNKELP SAGVPVVLTC 60 GRKKWNLYYG GARSTYKFIS TGWRKFVDGN NLKEGDGLVF ELSECSTSKI EFRVQILRGD 120 FPAELIPEDV EGTKSENPII LG* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PGSC0003DMP400064726 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015169749.1 | 2e-96 | PREDICTED: B3 domain-containing protein Os04g0386900-like | ||||
TrEMBL | M1DR54 | 4e-99 | M1DR54_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400093051 | 1e-100 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1819 | 21 | 54 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G33280.1 | 8e-11 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | PGSC0003DMP400064726 |
Publications ? help Back to Top | |||
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