PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400063655
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family MYB_related
Protein Properties Length: 404aa    MW: 46147.8 Da    PI: 8.4399
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400063655genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding38.62.5e-12223267347
                           SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
       Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                           +WT+ E+ l++ + +++G+g+Wk+I+r+    +t+ q+ s+ qky
  PGSC0003DMP400063655 223 PWTKGEHSLFLMGLNKFGKGDWKSISRHYVVSKTPTQVASHAQKY 267
                           7*****************************99************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512938.7423288IPR017884SANT domain
SMARTSM007170.113386IPR001005SANT/Myb domain
SuperFamilySSF466892.01E-73588IPR009057Homeodomain-like
CDDcd001670.001593684No hitNo description
PROSITE profilePS5129415.295213272IPR017930Myb domain
SuperFamilySSF466891.72E-14218271IPR009057Homeodomain-like
SMARTSM007179.1E-7220270IPR001005SANT/Myb domain
TIGRFAMsTIGR015571.1E-15222270IPR006447Myb domain, plants
CDDcd001671.00E-7223268No hitNo description
Gene3DG3DSA:1.10.10.604.0E-8223268IPR009057Homeodomain-like
PfamPF002491.1E-9223267IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 404 aa     Download sequence    Send to blast
MDWPEFLESS NLQEPTIDLY GVSPQDNHEV TAQTDRWTPE EKQVFENAFS RYNNLGSQTF  60
FEFIASKLPH KSMEEMKNLY INLFKEVEME NSLKNKNVVV GDVVDDHQHH QVPQEDNSSD  120
KEANLNGTPS RVEISRSRHH RRGIPWTEGE HSKINIFSVK NFICYFVIDF NKNVVVGDVV  180
DDHHQQHHQV PQEDNSSDKE TNLNDTPPRA EISPSRRRQW GIPWTKGEHS LFLMGLNKFG  240
KGDWKSISRH YVVSKTPTQV ASHAQKYFSR RTSKTPVDRR RPSINDIQTV TLNSRRTTTT  300
TTTTTVTTTP QINNNILAYN NNYQVGSSSR PFHHSNYTFG GPTFANNSNG NFGSYLRGEA  360
SGSNSFVMEQ SNNNNNNNLR RPVSPRPFLS MYLSSTRGNN PQV*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400063655
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754412e-88HG975441.1 Solanum pennellii chromosome ch02, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004233758.18e-87transcription factor SRM1-like
TrEMBLM1DNU30.0M1DNU3_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000919800.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA52342032
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58900.14e-28Homeodomain-like transcriptional regulator
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]