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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PGSC0003DMP400063267 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | BES1 | ||||||||
Protein Properties | Length: 183aa MW: 20634.2 Da PI: 8.1236 | ||||||||
Description | BES1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF822 | 110.6 | 2.6e-34 | 36 | 104 | 4 | 72 |
DUF822 4 grkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyrkg 72 r p+ +Er +nk+RE+ RR +a ki+aGLRa+Gnyklpk+aD n+ l ALc+eAGw ve+DGt k PGSC0003DMP400063267 36 FRYPSDRERQKNKQREKNRRRVAHKIFAGLRAHGNYKLPKHADTNDLLMALCKEAGWHVEEDGTINGKD 104 5899************************************************************86654 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF05687 | 5.8E-31 | 37 | 107 | IPR008540 | BES1/BZR1 plant transcription factor, N-terminal |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
Sequence ? help Back to Top |
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Protein Sequence Length: 183 aa Download sequence Send to blast |
MVEDKKTSGV RGCIKTSRGP WLVHRTAKDG SVVTRFRYPS DRERQKNKQR EKNRRRVAHK 60 IFAGLRAHGN YKLPKHADTN DLLMALCKEA GWHVEEDGTI NGKDPVKDLP RLIDVDSAQV 120 SMEDQTKDGD YCKCEDQLKD GEYYCKCEVE MNKVESEKGR PEGSLTSSAE VFDVNLTLSL 180 SS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zd4_A | 1e-12 | 37 | 99 | 372 | 434 | Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1 |
5zd4_B | 1e-12 | 37 | 99 | 372 | 434 | Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1 |
5zd4_C | 1e-12 | 37 | 99 | 372 | 434 | Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1 |
5zd4_D | 1e-12 | 37 | 99 | 372 | 434 | Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PGSC0003DMP400063267 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975449 | 1e-147 | HG975449.1 Solanum pennellii chromosome ch10, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010327721.1 | 1e-125 | protein BRASSINAZOLE-RESISTANT 2-like | ||||
TrEMBL | M1DMZ2 | 1e-133 | M1DMZ2_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400091592 | 1e-134 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA6204 | 21 | 30 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G19350.3 | 3e-16 | BES1 family protein |
Link Out ? help Back to Top | |
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Phytozome | PGSC0003DMP400063267 |
Publications ? help Back to Top | |||
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