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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
PGSC0003DMP400062939 |
Common Name | LOC107060808 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family |
bHLH |
Protein Properties |
Length: 267aa MW: 30508.3 Da PI: 9.6838 |
Description |
bHLH family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
PGSC0003DMP400062939 | genome | PGSC | View CDS |
|
Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | HLH | 28.8 | 2.2e-09 | 103 | 151 | 4 | 54 |
HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
HLH 4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54
+Er+RR+++ + +++Lr l+P+ +K s ++ e+ v+Y+k+L
PGSC0003DMP400062939 103 RRRDVERQRRSDMAKLYQRLRLLIPSkY---LVGKRSISDHIEEIVDYVKDL 151
55789*********************77...9******************99 PP
|
Sequence ? help Back to Top |
Protein Sequence Length: 267 aa
Download sequence Send
to blast |
MDDSEFDFGQ LDQLFNFLSS TPPPPPLLPP TTLQINQDSS FSLQKQNSNL VFTSTHHVPK 60 KKSIVTNYVT EKKPILNTNI NIIDDQVQDP SKEKKMVVEK KVRRRDVERQ RRSDMAKLYQ 120 RLRLLIPSKY LVGKRSISDH IEEIVDYVKD LKKDIEDLES KREKLKEMKN INCSSQLAPN 180 SSSMKLNDDD EDKIIVKSCN EGVEISIKGG VSLSKVLKVL MKEELIVNSC VSSTINQRLI 240 HIIQTKVNTR GDIDLALLRS KLMRLF*
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Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | HG975446 | 1e-151 | HG975446.1 Solanum pennellii chromosome ch07, complete genome. |