PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400062598
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family WRKY
Protein Properties Length: 312aa    MW: 35670.8 Da    PI: 9.0581
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400062598genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY89.82.3e-28160218259
                           --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                  WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                           +D + WrKYGqK++k+s+fpr+YY+C+++  C++kkk+e+s +d++++ + Y+geHnh+
  PGSC0003DMP400062598 160 NDIWIWRKYGQKHIKDSPFPRNYYKCSTSkLCKAKKKIEKSPKDENIFLVSYSGEHNHD 218
                           8*************************99879***************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.3E-26153220IPR003657WRKY domain
PROSITE profilePS5081127.898154220IPR003657WRKY domain
SuperFamilySSF1182903.14E-23155220IPR003657WRKY domain
SMARTSM007745.9E-30159219IPR003657WRKY domain
PfamPF031062.5E-22160218IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 312 aa     Download sequence    Send to blast
MSNDLKETPV NDPEHLYLHH KTMQGSTAFI WVIFHRIALL DKPEVSFWVT RDFPTAHQEK  60
PDDQVMMMNQ NGNQQLYLHP IQPAQFIQQS SFPPSPTTVV CVPPTTTTPK EWVDLQQLDI  120
GANIYPNFTF SMKTPLIQTT TRKNQSIRIT YELLQEELTN DIWIWRKYGQ KHIKDSPFPR  180
NYYKCSTSKL CKAKKKIEKS PKDENIFLVS YSGEHNHDPP TNRSNLDSCN SSFKFKLPKG  240
INIVPKTSTL NALSSSSKRV RRSRVVASPI IATMPPLEIG NKNKMIVAAV EDKGDSKEEV  300
DMNEDILMGF F*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A5e-161572201274WRKY transcription factor 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400062598
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754431e-113HG975443.1 Solanum pennellii chromosome ch04, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015159298.10.0PREDICTED: probable WRKY transcription factor 27
TrEMBLM1DLH90.0M1DLH9_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000909230.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA36681345
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52830.14e-30WRKY DNA-binding protein 27
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]