![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | PGSC0003DMP400062329 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
|
||||||||
Family | C2H2 | ||||||||
Protein Properties | Length: 179aa MW: 20177.8 Da PI: 9.0264 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 15.2 | 6.1e-05 | 37 | 59 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C++ F++ L H+++H PGSC0003DMP400062329 37 YTCSFCKRGFKSAQALGGHMNVH 59 9********************99 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 3.63E-6 | 35 | 63 | No hit | No description |
PROSITE profile | PS50157 | 11.177 | 37 | 64 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 2.3E-5 | 37 | 60 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.0052 | 37 | 59 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 39 | 59 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 179 aa Download sequence Send to blast |
MERQMKILSN NNNVKESYNY GNEDDGLLMC TWPPSCYTCS FCKRGFKSAQ ALGGHMNVHR 60 RDRAKFLMMR HHSPPTTTND KHTYSLLNLN PNPNPNISSS STPPPPSSSR KFSHYSNGGA 120 SHEIMRKCVV IPNLKSSSTT TKDSLCMQDK EFVRLDLQIG LFTESKQELD LELRLGYT* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1njq_A | 4e-11 | 32 | 59 | 2 | 29 | superman protein |
2l1o_A | 4e-11 | 32 | 59 | 2 | 29 | Transcriptional regulator SUPERMAN |
Search in ModeBase |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | PGSC0003DMP400062329 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | HG975445 | 0.0 | HG975445.1 Solanum pennellii chromosome ch06, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_004241016.1 | 8e-95 | transcriptional regulator SUPERMAN | ||||
TrEMBL | M1DKV8 | 1e-131 | M1DKV8_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400090654 | 1e-131 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2110 | 24 | 53 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G23130.1 | 5e-19 | C2H2 family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | PGSC0003DMP400062329 |
Publications ? help Back to Top | |||
---|---|---|---|
|