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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PGSC0003DMP400061699 | ||||||||
Common Name | LOC107058109 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 172aa MW: 18914.5 Da PI: 7.3635 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 65.9 | 4.1e-21 | 22 | 69 | 2 | 49 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 +i nk qvtfskRr+g++KKA+ELS L +a+vavi+ s+ gkl+ + PGSC0003DMP400061699 22 KIANKNSLQVTFSKRRAGLFKKASELSALSGAQVAVIVESPAGKLFSF 69 799******************************************988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 6.4E-29 | 13 | 72 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 23.675 | 13 | 73 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 9.16E-25 | 14 | 83 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 4.83E-34 | 14 | 88 | No hit | No description |
PRINTS | PR00404 | 7.1E-18 | 15 | 35 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 4.3E-23 | 22 | 69 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 7.1E-18 | 35 | 50 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 7.1E-18 | 50 | 71 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 172 aa Download sequence Send to blast |
MENPAAAAKK RSRGRQKIPI EKIANKNSLQ VTFSKRRAGL FKKASELSAL SGAQVAVIVE 60 SPAGKLFSFG NPSVDSVIHR FEKGEDDGFN SGSWWEDVCL ENLGLQELEE YMAAMQVLKK 120 NLLKNQASSS NDDLSMMLND DVFIPNLNLN LNLTLEGFLF STNFKQNTQG I* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 7 | 13 | AKKRSRG |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. Required for suppression of cellularization and promotion of nuclear proliferation during early endosperm development. The FERTILIZATION-INDEPENDENT SEED (FIS) polycomb complex is required for suppression of ALG62 expression at the end of the syncytial phase of endosperm development. {ECO:0000269|PubMed:18334668}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PGSC0003DMP400061699 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975441 | 2e-42 | HG975441.1 Solanum pennellii chromosome ch02, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015158921.1 | 1e-122 | PREDICTED: agamous-like MADS-box protein AGL62 | ||||
Swissprot | Q9FKK2 | 2e-25 | AGL62_ARATH; Agamous-like MADS-box protein AGL62 | ||||
TrEMBL | M1DJG1 | 1e-121 | M1DJG1_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400090024 | 1e-122 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA204 | 24 | 223 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G36590.1 | 7e-28 | M-type_MADS family protein |
Link Out ? help Back to Top | |
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Phytozome | PGSC0003DMP400061699 |
Entrez Gene | 107058109 |
Publications ? help Back to Top | |||
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