PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | PGSC0003DMP400061686 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
|
||||||||
Family | C2H2 | ||||||||
Protein Properties | Length: 156aa MW: 17751.5 Da PI: 9.5569 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 11.2 | 0.0012 | 46 | 68 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C++C+k+F + L H +H PGSC0003DMP400061686 46 YECKKCKKRFESFQALGGHATSH 68 99********9988887776666 PP | |||||||
2 | zf-C2H2 | 13.3 | 0.00026 | 90 | 112 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++Cgk F L H+r+H PGSC0003DMP400061686 90 HECSICGKEFAIGQALGGHMRKH 112 78*******************99 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 3.33E-8 | 45 | 112 | No hit | No description |
Pfam | PF13912 | 1.7E-9 | 45 | 69 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 9.64 | 46 | 73 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.23 | 46 | 68 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 48 | 68 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 4.7E-6 | 83 | 115 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
Pfam | PF13912 | 5.9E-11 | 90 | 115 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.069 | 90 | 112 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 10.824 | 90 | 117 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 92 | 112 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 156 aa Download sequence Send to blast |
MCTSSATMNM RLKKSKEEES VENFAMANCV DIAKRNELLG RRKLYYECKK CKKRFESFQA 60 LGGHATSHKN KLNMMMSTNG ESLHVNKKKH ECSICGKEFA IGQALGGHMR KHRDELNQIE 120 QNKKIKLEEN LIKSGELVES TKTSLNLDLN LSIWE* |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | PGSC0003DMP400061686 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | HG975450 | 1e-136 | HG975450.1 Solanum pennellii chromosome ch11, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_015158881.1 | 1e-102 | PREDICTED: zinc finger protein ZAT11-like | ||||
TrEMBL | M1DJE8 | 1e-108 | M1DJE8_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400090011 | 1e-109 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA366 | 24 | 150 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G37430.1 | 1e-24 | C2H2 family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | PGSC0003DMP400061686 |
Publications ? help Back to Top | |||
---|---|---|---|
|