PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400061641
Common NameLOC107061876
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family M-type_MADS
Protein Properties Length: 171aa    MW: 19696.2 Da    PI: 4.6622
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400061641genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF25.71.5e-081658244
                          ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS CS
                SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstg 44
                          +ien+   + +fskRr+++ KKA+ +    d++v ++ fs+++
  PGSC0003DMP400061641 16 KIENEDDLYSSFSKRRETLYKKASDMIRKYDIDVGIVTFSPSD 58
                          69999999********************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.4E-8766IPR002100Transcription factor, MADS-box
PROSITE profilePS5006614.872767IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.02E-16881IPR002100Transcription factor, MADS-box
CDDcd002665.65E-16877No hitNo description
PRINTSPR004041.1E-5929IPR002100Transcription factor, MADS-box
PfamPF003194.6E-131663IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-52944IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-54465IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 171 aa     Download sequence    Send to blast
MAEKKTLGRQ KISMAKIENE DDLYSSFSKR RETLYKKASD MIRKYDIDVG IVTFSPSDNP  60
FSFFHPTIDA VVDRFFSPYT QGSETSRLNI ANTRTRIKEK QVELEDLEII KETLANQTTD  120
ETDIEEMWKQ IKEFNPEDLK KFESRLDEVD LMLKNVVASS IAQAPQENAN *
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400061641
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754461e-160HG975446.1 Solanum pennellii chromosome ch07, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015167292.11e-122PREDICTED: agamous-like MADS-box protein AGL28
TrEMBLM1DJA71e-121M1DJA7_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000899661e-121(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA38220138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01530.18e-22AGAMOUS-like 28
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]