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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PGSC0003DMP400061367 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | GRAS | ||||||||
Protein Properties | Length: 543aa MW: 61002.5 Da PI: 6.0063 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 241.1 | 4.7e-74 | 161 | 541 | 2 | 374 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykal..ppsetseknsseelaalklfsevs 88 ++lL cA a++ g+++++q+lL l+elas +gd+++Rlaa+ ++AL ++l++ +s+ +++ +++ s+ n++ +l f ++s PGSC0003DMP400061367 161 EHLLNPCAAAITVGNMNRVQHLLYVLHELASFTGDANHRLAAHGLRALTHHLSSPGSSSASSGtiGVTNFSSANHKFFRDSLINFIDIS 249 699***************************************************666665555115555555555555555555***** PP GRAS 89 PilkfshltaNqaIleavege...ervHiiDfdisqGlQWpaLlqaLasRp.egppslRiTgvgspesg.........skeeleetger 164 P++++ + +aN+ +l+ + ++ + +Hi+D+++s+G+QWp+Ll++L+ R+ ++pp +R+T++ + +++ ++ PGSC0003DMP400061367 250 PWFRIPNNIANSSVLQIIGEQdrlKNLHILDIGVSHGFQWPTLLEELTRRSgGPPPLVRLTVITPTTENgelrgtpfvIGPPGYDFSSQ 338 *******************99555556************************55666*********887789998888877888999*** PP GRAS 165 LakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqe..adhns. 250 L +A+++++++++n l l++l+ + ++ ++E+l+++ +++lh+l +++++ r+++Lk++ksl Pk +v++e++ +++ns PGSC0003DMP400061367 339 LLAYAKAININLQINRLDNFPLQNLNSQIINSTSDETLVICAQFRLHNLN---HTIPDDRTDLLKILKSLDPKGLVLSENNteCSCNSc 424 ****************8777*****************************8...8899999*******************9833555552 PP GRAS 251 esFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqakl 339 ++F++ f++ +ey + ++ds+++ + + r + Er++++ e+ +++++ g++ +e++ekW er++++GF + ++e+a + a++ PGSC0003DMP400061367 425 GDFATMFSRRVEYLWRFLDSTSVAY----KGRESEERKMMEGEAAKALTNMGEM----NERKEKWCERMRNVGFVKEVFGEDAIDGARA 505 69*******************9985....778888888888899********99....88888************************** PP GRAS 340 llrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374 llrk++ ++++rvee++g++ l Wk++p+ ++S W+ PGSC0003DMP400061367 506 LLRKYDsNWEMRVEEKDGCVDLWWKGQPISFCSLWK 541 ******9999*************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 36.895 | 134 | 520 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 1.6E-71 | 161 | 541 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0042446 | Biological Process | hormone biosynthetic process | ||||
GO:2000032 | Biological Process | regulation of secondary shoot formation |
Sequence ? help Back to Top |
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Protein Sequence Length: 543 aa Download sequence Send to blast |
MTIEEPEPNS NSDPISEWLA STLSDVPSFL DEPYSYTDDL NFYADSWWVP DQDDQIVNHN 60 IIIDNTCNSF NISSPVNTAI SNIPLEPIIL DQPQPVDLSK KRKISDQNPK TSKKNHNRQI 120 NEAENAHTIG DQGGVQVRRP KRVTTKSTGN NSNNKEGRWA EHLLNPCAAA ITVGNMNRVQ 180 HLLYVLHELA SFTGDANHRL AAHGLRALTH HLSSPGSSSA SSGTIGVTNF SSANHKFFRD 240 SLINFIDISP WFRIPNNIAN SSVLQIIGEQ DRLKNLHILD IGVSHGFQWP TLLEELTRRS 300 GGPPPLVRLT VITPTTENGE LRGTPFVIGP PGYDFSSQLL AYAKAININL QINRLDNFPL 360 QNLNSQIINS TSDETLVICA QFRLHNLNHT IPDDRTDLLK ILKSLDPKGL VLSENNTECS 420 CNSCGDFATM FSRRVEYLWR FLDSTSVAYK GRESEERKMM EGEAAKALTN MGEMNERKEK 480 WCERMRNVGF VKEVFGEDAI DGARALLRKY DSNWEMRVEE KDGCVDLWWK GQPISFCSLW 540 KI* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3g_B | 1e-31 | 157 | 541 | 84 | 473 | Protein SHORT-ROOT |
5b3h_B | 5e-32 | 157 | 541 | 30 | 419 | Protein SHORT-ROOT |
5b3h_E | 5e-32 | 157 | 541 | 30 | 419 | Protein SHORT-ROOT |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator essential for Nod-factor-induced gene expression. Acts downstream of calcium spiking. May be a target of DMI3, a calcium/calmodulin-dependent protein kinase (CCaMK) (PubMed:15961669). Is essential for Nod factor-elicited expression of ERN1 (PubMed:23077241). {ECO:0000269|PubMed:15961669, ECO:0000269|PubMed:23077241}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PGSC0003DMP400061367 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Not induced after treatment with Sinorhizobium meliloti. {ECO:0000269|PubMed:15961669}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975442 | 0.0 | HG975442.1 Solanum pennellii chromosome ch03, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006342916.1 | 0.0 | PREDICTED: nodulation-signaling pathway 1 protein-like | ||||
Swissprot | Q4VYC8 | 0.0 | NSP1_MEDTR; Nodulation-signaling pathway 1 protein | ||||
TrEMBL | M1DIQ1 | 0.0 | M1DIQ1_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400089692 | 0.0 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4949 | 21 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G13840.1 | 1e-156 | GRAS family protein |
Link Out ? help Back to Top | |
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Phytozome | PGSC0003DMP400061367 |
Publications ? help Back to Top | |||
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