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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
PGSC0003DMP400060076 |
Common Name | LOC102604143 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family |
Trihelix |
Protein Properties |
Length: 374aa MW: 41270 Da PI: 9.8936 |
Description |
Trihelix family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
PGSC0003DMP400060076 | genome | PGSC | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | trihelix | 51.5 | 2.6e-16 | 68 | 155 | 1 | 86 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspk...qCkekwenlnkrykkikegekkrtsessstcpyfdql 85
+W+++ + +Liea e+ +l+rg+lk+++W++v++ + r++ ++++pk qCk++++ ++k+yk +k + + s++p+fd+l
PGSC0003DMP400060076 68 CWSEEATAVLIEAWGERYMELSRGNLKQKHWKDVADIVcRQEDYRKTPKtdiQCKNRIDTVKKKYKLEKSKIAAG--QGPSKWPFFDKL 154
7**********************************876688888887754449*****************99997..56668******9 PP
trihelix 86 e 86
+
PGSC0003DMP400060076 155 D 155
7 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0009793 | Biological Process | embryo development ending in seed dormancy |
GO:0010029 | Biological Process | regulation of seed germination |
GO:0010431 | Biological Process | seed maturation |
GO:0048831 | Biological Process | regulation of shoot system development |
GO:0005730 | Cellular Component | nucleolus |
GO:0043565 | Molecular Function | sequence-specific DNA binding |
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 374 aa
Download sequence Send
to blast |
MENDEETQSH QSGGSGSPES PRSNGRITVT VASAPPQNTL TLALPIQQSR PAGASGGGGS 60 GGGGREDCWS EEATAVLIEA WGERYMELSR GNLKQKHWKD VADIVCRQED YRKTPKTDIQ 120 CKNRIDTVKK KYKLEKSKIA AGQGPSKWPF FDKLDMLIGP TAKINPTVAA GPSNLYSGNQ 180 HVPMGIPMGV RSLPQLRQHQ QLQKQKQPSR KRPHMDSDTS ESESEPDLSP ASTDSFPPGT 240 FQKKRPRFQK EMLNSSALRQ GGIGIGEASG KEGGNKNWGN SVRELTQAIL KFGEAYEQTE 300 SAKLQQMVEM EKQRMKFAKE MELQRMQFFM NTQLEISQLK HRRSGNSNHH SNNHAAATSN 360 HNNNNNNNSD SSI*
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Functional Description ? help
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Source |
Description |
UniProt | Transcription regulator that may repress the maturation program during early embryogenesis. {ECO:0000269|PubMed:21330492}. |
Best hit in Arabidopsis thaliana ? help
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Hit ID |
E-value |
Description |
AT3G14180.1 | 3e-63 | sequence-specific DNA binding transcription factors |