PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400059804
Common NameLOC107061454
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family WRKY
Protein Properties Length: 332aa    MW: 37514.8 Da    PI: 8.128
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400059804genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY46.38.2e-15171223259
                           --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                  WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                           +D ++W K GqK++kgs+f       ts+ C++kk +e+s + ++++ + Y+geHnh+
  PGSC0003DMP400059804 171 NDIWRWHKCGQKHIKGSPFL-----STSKLCEAKKTIEKSPKGENLFLVSYSGEHNHD 223
                           8****************975.....699*****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.807.5E-14159225IPR003657WRKY domain
SuperFamilySSF1182904.32E-12165225IPR003657WRKY domain
PROSITE profilePS5081117.924165225IPR003657WRKY domain
SMARTSM007745.5E-12170224IPR003657WRKY domain
PfamPF031063.0E-10171223IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 332 aa     Download sequence    Send to blast
MGEDDWDKSG VVKSCNFNRP NNDVAPNLGM ETSPNDVSNY FDIRLAYEMT NFNGLSKVFS  60
IDFPIAHQEK PNDLVKIMNQ NGNQELYLHP IQPAQFIQRS SFLPSPTTIV CMPPITPTPQ  120
ELIDQQKHLD IRSNIYPNFT FSMRNPLIQT TTRKIQSKTI IYELLQEELT NDIWRWHKCG  180
QKHIKGSPFL STSKLCEAKK TIEKSPKGEN LFLVSYSGEH NHDLPMNRRN LVGCNTNSKF  240
KLPKGINIVP KASILNVSSS SSKCAKRSRA VASPIIPTMP TLEIGSKNKM VDAAEKNRGD  300
GKEEVNMNED NMMDLKNSKE LLFPPNMEEN E*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400059804
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015166200.10.0PREDICTED: probable WRKY transcription factor 27
TrEMBLM1DFA70.0M1DFA7_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000881290.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA36681345
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52830.12e-19WRKY DNA-binding protein 27
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]