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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PGSC0003DMP400058743 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | WRKY | ||||||||
Protein Properties | Length: 331aa MW: 37437.6 Da PI: 10.0354 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 91.1 | 8.6e-29 | 170 | 228 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +D ++WrKYGqK++kgs+fpr+YY+C+++ +C++kk++e+s ++++++ + Y+geHnh+ PGSC0003DMP400058743 170 NDIWTWRKYGQKHIKGSPFPRNYYKCSTSkHCEAKKQIEKSPKNENIFLVSYSGEHNHD 228 79************************9988****************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 2.8E-27 | 164 | 230 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 28.92 | 164 | 230 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 8.24E-24 | 165 | 230 | IPR003657 | WRKY domain |
SMART | SM00774 | 8.3E-30 | 169 | 229 | IPR003657 | WRKY domain |
Pfam | PF03106 | 4.4E-23 | 170 | 228 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 331 aa Download sequence Send to blast |
MGDDDRDIGG IVRSCNINRP NKVVAPNLGL KTSPNDVWNS FDKLLTPDMT SFNGLSEIFS 60 LDFPIARREN SYDQVNIMNQ NSNKQLYLHS IQPVQFIQQI TVPQSRTTVA CVPSTTTTPQ 120 EWINLQQLNV GTNIYPNFTF SMKTPLTQTR TRKNQSISLT YELLQEELRN DIWTWRKYGQ 180 KHIKGSPFPR NYYKCSTSKH CEAKKQIEKS PKNENIFLVS YSGEHNHDPP MNRRYLASCN 240 SNSKFKLPKS INILPKVSIL NASSPSSKRV KHSRVVVSPI IATKPSFEIG SKNKMVVAAV 300 QNKGDGKEKV DMNEDIFMGF DQLQGITTST * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 3e-16 | 167 | 230 | 12 | 74 | WRKY transcription factor 1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PGSC0003DMP400058743 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015168670.1 | 0.0 | PREDICTED: probable WRKY transcription factor 27 | ||||
TrEMBL | M1DD35 | 0.0 | M1DD35_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400087068 | 0.0 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3668 | 13 | 45 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G52830.1 | 1e-30 | WRKY DNA-binding protein 27 |
Link Out ? help Back to Top | |
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Phytozome | PGSC0003DMP400058743 |
Publications ? help Back to Top | |||
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