PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400057959
Common NameLOC107062508
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family WRKY
Protein Properties Length: 331aa    MW: 37551.5 Da    PI: 9.2573
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400057959genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY92.82.7e-29170228259
                           --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                  WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                           +D ++WrKYGqK++kgs+fpr+YY+C+++ +C++kk++e+s +d++++ + Y+geHnh+
  PGSC0003DMP400057959 170 NDIWTWRKYGQKHIKGSPFPRNYYKCSTSkHCEAKKQIEKSPKDENIFLVSYSGEHNHD 228
                           79************************9988****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.807.5E-28164230IPR003657WRKY domain
PROSITE profilePS5081129.493164230IPR003657WRKY domain
SuperFamilySSF1182903.53E-24165230IPR003657WRKY domain
SMARTSM007742.0E-30169229IPR003657WRKY domain
PfamPF031061.9E-23170228IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 331 aa     Download sequence    Send to blast
MGDDDLDIGG IVRSCNINRL NNVLVPNLGL KTSPNDVWNS FDKLLTPDMT SNNGLSEFFS  60
LDYPITRREN PYDQVIIMNQ NSNQQLYLHS IQPVQFIQQI TVPQSRTTVA CVSPTTTTPQ  120
EWINLQQLDE GTNIYPNFTF SMKTPFTQTR TRKNQSIRLT YELLQEELRN DIWTWRKYGQ  180
KHIKGSPFPR NYYKCSTSKH CEAKKQIEKS PKDENIFLVS YSGEHNHDPP MNRTYLASCN  240
SNSKFMLPKS INILPKTSIL NESSSSSKRV KNSRAAASPI IATKPPLEIG RKNKMVVAAV  300
QNKGDGKEKV DMNEDIFMGF DQLQGVTTST *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A7e-171672301274WRKY transcription factor 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400057959
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015168670.10.0PREDICTED: probable WRKY transcription factor 27
TrEMBLM1DBE70.0M1DBE7_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000862840.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA36681345
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52830.13e-32WRKY DNA-binding protein 27
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]