PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400057244
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family M-type_MADS
Protein Properties Length: 117aa    MW: 12595.3 Da    PI: 10.5584
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400057244genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF42.67.8e-141259249
                          ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
                SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                          +i  k  r  tfskR++g++ KAeEL  L+  +v  ++fs++g  y+y
  PGSC0003DMP400057244 12 KITKKLARLATFSKRKKGLFRKAEELESLTSSRVTSVVFSPSGIPYTY 59
                          6889999************************************99999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006618.979363IPR002100Transcription factor, MADS-box
SMARTSM004321.0E-12362IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.88E-17471IPR002100Transcription factor, MADS-box
PRINTSPR004045.4E-12525IPR002100Transcription factor, MADS-box
PfamPF003191.4E-171259IPR002100Transcription factor, MADS-box
PRINTSPR004045.4E-122540IPR002100Transcription factor, MADS-box
PRINTSPR004045.4E-124061IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 117 aa     Download sequence    Send to blast
MGTGKKKIEI EKITKKLARL ATFSKRKKGL FRKAEELESL TSSRVTSVVF SPSGIPYTYG  60
DVNSVIKKHF SSCNRSEIST SVMNSHHSSY DVSGESSGSK SSSPQSGMVS VIGWSI*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400057244
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015164379.11e-60PREDICTED: agamous-like MADS-box protein AGL23
TrEMBLM1D9S63e-76M1D9S6_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000855695e-77(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA23371757
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G47760.15e-11AGAMOUS-like 102
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]