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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PGSC0003DMP400057108 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | C2H2 | ||||||||
Protein Properties | Length: 182aa MW: 20527.1 Da PI: 4.8931 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 19.4 | 3e-06 | 25 | 47 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ykC +C ++F+++ L+ H+r+H PGSC0003DMP400057108 25 YKCRICLEVFTSSQGLVGHQRKH 47 9*********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 1.8E-5 | 24 | 51 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 6.5E-4 | 25 | 47 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SMART | SM00355 | 0.0097 | 25 | 47 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 10.679 | 25 | 52 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 27 | 47 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 182 aa Download sequence Send to blast |
MQQQQPSSKM AHQGLVTRAA GIWYYKCRIC LEVFTSSQGL VGHQRKHMSQ GTWIRVPHVV 60 VPSPAPDPLL IQVDLFVRRL NQQIPYGNRL NVNLLLASTP IESISLPIES SGSITVSAEW 120 MREKENKDKE VEQSSSVTIS ADWMCEKESK DQEAEQSSSI TVTADWMREK ENDDQEVEQL 180 D* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PGSC0003DMP400057108 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006362618.1 | 1e-116 | PREDICTED: uncharacterized protein LOC102583262 | ||||
TrEMBL | M1D9H4 | 1e-131 | M1D9H4_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400085433 | 1e-132 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA6643 | 8 | 21 |
Link Out ? help Back to Top | |
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Phytozome | PGSC0003DMP400057108 |
Publications ? help Back to Top | |||
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