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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
PGSC0003DMP400056843 |
Common Name | LOC107062344 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family |
ERF |
Protein Properties |
Length: 291aa MW: 32240 Da PI: 5.7186 |
Description |
ERF family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
PGSC0003DMP400056843 | genome | PGSC | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | AP2 | 56 | 1e-17 | 46 | 95 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
+y+GVr+++ +g+WvAeIr+p++ r+r +lg+f tae+Aa+a+++a+ l+g
PGSC0003DMP400056843 46 RYRGVRQRS-WGKWVAEIREPRK---RTRRWLGTFATAEDAARAYDRAAIILYG 95
59****999.**********954...5999*******************98876 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0005634 | Cellular Component | nucleus |
GO:0003677 | Molecular Function | DNA binding |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 291 aa
Download sequence Send
to blast |
MNSTSAGSDN PHPTQDINHQ EKSTSEEKSN KKGSKGKGGP DNNKFRYRGV RQRSWGKWVA 60 EIREPRKRTR RWLGTFATAE DAARAYDRAA IILYGSKAQL NLQPSGANAS SSSSNSSKRG 120 STSSTTQTLR PLLPRPPSGF DLSFSSSSST LLPPNVLAPA NNYLPYGFYP AVQYAEDISQ 180 NPQYSIQKQT FDDNYGYLDG ETTKASGMIW SDSNSNPNPN PNPREEDQNQ QYNQHNCLYD 240 NVNTFVDAAP VVSDPVASPV LWPPIIDDND NYHPADIWDY GNNDPFLFDF *
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Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | HG975442 | 1e-151 | HG975442.1 Solanum pennellii chromosome ch03, complete genome. |