PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400056426
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family C2H2
Protein Properties Length: 263aa    MW: 28015.5 Da    PI: 8.2881
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400056426genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.80.00035100122123
                           EEETTTTEEESSHHHHHHHHHHT CS
               zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                           +kC+ C+k+F++   L  H  +H
  PGSC0003DMP400056426 100 FKCSECPKVFTSYQALGGHKASH 122
                           89**********99999998887 PP
2zf-C2H213.20.00026157179123
                           EEETTTTEEESSHHHHHHHHHHT CS
               zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                           ++C+ C k F++   L  H r+H
  PGSC0003DMP400056426 157 HVCSVCQKAFPTGQALGGHKRRH 179
                           79*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.94E-999122No hitNo description
PfamPF139121.2E-12100124IPR007087Zinc finger, C2H2
PROSITE profilePS501579.993100122IPR007087Zinc finger, C2H2
SMARTSM003550.013100122IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280102122IPR007087Zinc finger, C2H2
SuperFamilySSF576674.94E-9152179No hitNo description
PfamPF139122.8E-11157181IPR007087Zinc finger, C2H2
SMARTSM003550.066157179IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.66157184IPR007087Zinc finger, C2H2
PROSITE patternPS000280159179IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 263 aa     Download sequence    Send to blast
MSIEALKSPT AAALPPLEEI DDSHNLDSWA KGKRSKRPRI ENPPTPDQYL ALCLLMLAND  60
DGTGFGKGKG TGSIGVVIEQ QQEKKLLKPV FIKEKTEQLF KCSECPKVFT SYQALGGHKA  120
SHRKINVPAT GNDDNNPSTS TSTSGNISAL NPSGRSHVCS VCQKAFPTGQ ALGGHKRRHY  180
EGKLGGNNRY ISGEGLQSGS VVTTSDGGGA STPIARDFDL NMPASPGCQL DLTIDCGGRS  240
QHPIEQEVES PMPAKKPRLF FD*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400056426
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF0931860.0EF093186.1 Solanum tuberosum zinc finger protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001275233.11e-178uncharacterized protein LOC102577828
TrEMBLM1D7Y90.0M1D7Y9_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000847510.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA7352495
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G27730.15e-40salt tolerance zinc finger
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]