PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PGSC0003DMP400056268 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | WRKY | ||||||||
Protein Properties | Length: 331aa MW: 37298.5 Da PI: 5.9475 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 73.7 | 2.4e-23 | 128 | 184 | 2 | 58 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnh 58 +Dg +WrKYGqK + g ++pr YYrC + C+++k v+r +++p ++e+tY g+H + PGSC0003DMP400056268 128 EDGLSWRKYGQKLILGEKYPREYYRCPRRCCEATKMVQRIETEPLTFEVTYGGSHSC 184 7******************************************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 2.1E-23 | 116 | 186 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 19.267 | 122 | 183 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 6.41E-22 | 125 | 186 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.3E-24 | 127 | 186 | IPR003657 | WRKY domain |
Pfam | PF03106 | 9.5E-22 | 128 | 184 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 331 aa Download sequence Send to blast |
MGENNFWERE VVITELTKGK ELMLQLQKHF DPMKQDVYRY LAAEILSSYD KAMSLLNGTA 60 LSGMMSKSKE IINPSPSSST ASQLESHQLL ADSSTKSCDR PSKSRKRKML ARRKEYVEAR 120 PGEEVPPEDG LSWRKYGQKL ILGEKYPREY YRCPRRCCEA TKMVQRIETE PLTFEVTYGG 180 SHSCGQETKN QNEELIAVQQ TKCDEVGRGA GQIFESYIHK MVSTPNNSYN NSSTGVEFSN 240 SNSVFNIPNS DFIPTPTSSP HPDMDFPFDY SSFTHLFGQD VPDNSGNDSL AALAAEVYKL 300 YEENGKLNFP HRYDKQAENS RPSNNVGDQS * |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 103 | 108 | SRKRKM |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PGSC0003DMP400056268 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975444 | 0.0 | HG975444.1 Solanum pennellii chromosome ch05, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006345566.1 | 0.0 | PREDICTED: probable WRKY transcription factor 41 | ||||
TrEMBL | M1D7L2 | 0.0 | M1D7L2_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400084214 | 0.0 | (Solanum tuberosum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G11070.1 | 6e-20 | WRKY family protein |
Link Out ? help Back to Top | |
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Phytozome | PGSC0003DMP400056268 |
Publications ? help Back to Top | |||
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