PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400056267
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family WRKY
Protein Properties Length: 331aa    MW: 37298.5 Da    PI: 5.9475
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400056267genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY73.72.4e-23128184258
                           --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS CS
                  WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnh 58 
                           +Dg +WrKYGqK + g ++pr YYrC  + C+++k v+r +++p ++e+tY g+H +
  PGSC0003DMP400056267 128 EDGLSWRKYGQKLILGEKYPREYYRCPRRCCEATKMVQRIETEPLTFEVTYGGSHSC 184
                           7******************************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.1E-23116186IPR003657WRKY domain
PROSITE profilePS5081119.267122183IPR003657WRKY domain
SuperFamilySSF1182906.41E-22125186IPR003657WRKY domain
SMARTSM007741.3E-24127186IPR003657WRKY domain
PfamPF031069.5E-22128184IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 331 aa     Download sequence    Send to blast
MGENNFWERE VVITELTKGK ELMLQLQKHF DPMKQDVYRY LAAEILSSYD KAMSLLNGTA  60
LSGMMSKSKE IINPSPSSST ASQLESHQLL ADSSTKSCDR PSKSRKRKML ARRKEYVEAR  120
PGEEVPPEDG LSWRKYGQKL ILGEKYPREY YRCPRRCCEA TKMVQRIETE PLTFEVTYGG  180
SHSCGQETKN QNEELIAVQQ TKCDEVGRGA GQIFESYIHK MVSTPNNSYN NSSTGVEFSN  240
SNSVFNIPNS DFIPTPTSSP HPDMDFPFDY SSFTHLFGQD VPDNSGNDSL AALAAEVYKL  300
YEENGKLNFP HRYDKQAENS RPSNNVGDQS *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1103108SRKRKM
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400056267
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754440.0HG975444.1 Solanum pennellii chromosome ch05, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006345566.10.0PREDICTED: probable WRKY transcription factor 41
TrEMBLM1D7L20.0M1D7L2_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000842140.0(Solanum tuberosum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11070.16e-20WRKY family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]