PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PGSC0003DMP400056265 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | WRKY | ||||||||
Protein Properties | Length: 251aa MW: 28429.3 Da PI: 7.46 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 70.6 | 2.2e-22 | 128 | 184 | 2 | 58 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnh 58 +Dg nWrKYGqK + g+++pr Y++C ++C ++k v+r +++p ++e+tY ++H + PGSC0003DMP400056265 128 EDGLNWRKYGQKLILGAKYPREYFQCVCRHCDATKMVQRIQTEPLTFEVTYGESHSC 184 7******************************************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 4.4E-22 | 119 | 186 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 17.832 | 122 | 183 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 4.45E-21 | 124 | 186 | IPR003657 | WRKY domain |
SMART | SM00774 | 3.5E-22 | 127 | 186 | IPR003657 | WRKY domain |
Pfam | PF03106 | 2.3E-20 | 128 | 184 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005975 | Biological Process | carbohydrate metabolic process | ||||
GO:0006032 | Biological Process | chitin catabolic process | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005783 | Cellular Component | endoplasmic reticulum | ||||
GO:0016021 | Cellular Component | integral component of membrane | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0004568 | Molecular Function | chitinase activity | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 251 aa Download sequence Send to blast |
MGENNFWERE VVITELTKGK ELMLQLQKHF DPMKQDVYRY LAAEILSSYD KAMSLLNGTA 60 LSGMMSKSKE IINPSPSSST ASQLESHQLL ADSSTKSCDR PSKSRKRKML APRTEYVEAR 120 HGEEVPPEDG LNWRKYGQKL ILGAKYPREY FQCVCRHCDA TKMVQRIQTE PLTFEVTYGE 180 SHSCGQENKN RNEELLVAVG TQVGRAAGKL SECYIPEMVT PNNSKTKYPS DITYDTILQL 240 FSDQPSYIHL * |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 103 | 108 | SRKRKM |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PGSC0003DMP400056265 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975444 | 1e-148 | HG975444.1 Solanum pennellii chromosome ch05, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006345566.1 | 1e-123 | PREDICTED: probable WRKY transcription factor 41 | ||||
Refseq | XP_027772695.1 | 1e-124 | probable WRKY transcription factor 41 | ||||
TrEMBL | M1D7L1 | 0.0 | M1D7L1_SOLTU; Uncharacterized protein | ||||
STRING | Solyc05g050330.2.1 | 1e-152 | (Solanum lycopersicum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G11070.1 | 2e-27 | WRKY family protein |
Link Out ? help Back to Top | |
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Phytozome | PGSC0003DMP400056265 |
Publications ? help Back to Top | |||
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